miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27584 5' -59.3 NC_005882.1 + 573 0.66 0.364251
Target:  5'- uUCUGuCCGCCCCaguggccggccauGCgGUCGGCAaucucGCGCc -3'
miRNA:   3'- uGGACuGGCGGGG-------------UG-UAGUCGU-----CGCG- -5'
27584 5' -59.3 NC_005882.1 + 3863 0.72 0.141999
Target:  5'- uGCUUGAgCGUCgCG-AUCGGCAGCGCg -3'
miRNA:   3'- -UGGACUgGCGGgGUgUAGUCGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 4228 0.67 0.315465
Target:  5'- uCCUGGCCGUCgUCGCGgaaUCGGgCGGCGg -3'
miRNA:   3'- uGGACUGGCGG-GGUGU---AGUC-GUCGCg -5'
27584 5' -59.3 NC_005882.1 + 4847 0.7 0.197526
Target:  5'- gAUCUGcuuuGCCGCCUCgaucaGCGagAGCGGCGCg -3'
miRNA:   3'- -UGGAC----UGGCGGGG-----UGUagUCGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 10346 0.68 0.292615
Target:  5'- uGCC-GACCGCguacguuuucCCCGCAUacuGGCAGcCGCc -3'
miRNA:   3'- -UGGaCUGGCG----------GGGUGUAg--UCGUC-GCG- -5'
27584 5' -59.3 NC_005882.1 + 11901 0.66 0.382832
Target:  5'- uCCUGAUCGCCUUuguCGUCGcguuGCucGGCGCc -3'
miRNA:   3'- uGGACUGGCGGGGu--GUAGU----CG--UCGCG- -5'
27584 5' -59.3 NC_005882.1 + 12041 0.66 0.347986
Target:  5'- ---cGugCGUUgCGCGUCAGCucGGCGCg -3'
miRNA:   3'- uggaCugGCGGgGUGUAGUCG--UCGCG- -5'
27584 5' -59.3 NC_005882.1 + 12591 0.67 0.323375
Target:  5'- cGCC-GGCCGCCgCCGCGaCacacuGGCcGCGCg -3'
miRNA:   3'- -UGGaCUGGCGG-GGUGUaG-----UCGuCGCG- -5'
27584 5' -59.3 NC_005882.1 + 13714 0.67 0.315465
Target:  5'- ---aGAUCGCCCCAC--CAGCGGC-Cg -3'
miRNA:   3'- uggaCUGGCGGGGUGuaGUCGUCGcG- -5'
27584 5' -59.3 NC_005882.1 + 14835 1.1 0.000187
Target:  5'- aACCUGACCGCCCCACAUCAGCAGCGCc -3'
miRNA:   3'- -UGGACUGGCGGGGUGUAGUCGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 15386 0.7 0.214102
Target:  5'- uGCUUGAUCgGCuCCCGCGcuUCacgGGCGGCGCc -3'
miRNA:   3'- -UGGACUGG-CG-GGGUGU--AG---UCGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 15743 0.71 0.163156
Target:  5'- gACCggUGACCGCCaaGUcgCGGCGGCGCc -3'
miRNA:   3'- -UGG--ACUGGCGGggUGuaGUCGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 16073 0.67 0.323375
Target:  5'- ---cGGCCGCCUUg---CGGCGGCGCa -3'
miRNA:   3'- uggaCUGGCGGGGuguaGUCGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 18335 0.66 0.373906
Target:  5'- -gCUGACCGCggCCGCGUC-GCGuCGCa -3'
miRNA:   3'- ugGACUGGCGg-GGUGUAGuCGUcGCG- -5'
27584 5' -59.3 NC_005882.1 + 19059 0.66 0.355626
Target:  5'- ---cGACCcaGCCCCACGcCGGCGcguugucGCGCg -3'
miRNA:   3'- uggaCUGG--CGGGGUGUaGUCGU-------CGCG- -5'
27584 5' -59.3 NC_005882.1 + 19403 0.68 0.257443
Target:  5'- gACCUGAUCagccguGUCCCggccgaauuGCGUCAGCAGC-Ca -3'
miRNA:   3'- -UGGACUGG------CGGGG---------UGUAGUCGUCGcG- -5'
27584 5' -59.3 NC_005882.1 + 19492 0.72 0.141999
Target:  5'- -gUUG-CCGCCCCGCGUuCGGCGaauGCGCu -3'
miRNA:   3'- ugGACuGGCGGGGUGUA-GUCGU---CGCG- -5'
27584 5' -59.3 NC_005882.1 + 21051 0.68 0.27108
Target:  5'- gGCCUGaACCGCuUCCAguuCGUCGGCuucgaugguGGCGUg -3'
miRNA:   3'- -UGGAC-UGGCG-GGGU---GUAGUCG---------UCGCG- -5'
27584 5' -59.3 NC_005882.1 + 21156 0.66 0.382832
Target:  5'- cGCC-GAgCGCCuUCGCGcCGGCuGCGCa -3'
miRNA:   3'- -UGGaCUgGCGG-GGUGUaGUCGuCGCG- -5'
27584 5' -59.3 NC_005882.1 + 21342 0.7 0.197526
Target:  5'- cGCC-GGCCGCCgucgCCGCAUCG--AGCGCg -3'
miRNA:   3'- -UGGaCUGGCGG----GGUGUAGUcgUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.