miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27584 5' -59.3 NC_005882.1 + 31954 0.75 0.092764
Target:  5'- aACCUGACCGaCgaGCGUCGGCGGcCGCu -3'
miRNA:   3'- -UGGACUGGCgGggUGUAGUCGUC-GCG- -5'
27584 5' -59.3 NC_005882.1 + 25737 0.66 0.347144
Target:  5'- aACCUGACCcgugaugaagaGUUCCGgAUCGGCGagacgauGCGCc -3'
miRNA:   3'- -UGGACUGG-----------CGGGGUgUAGUCGU-------CGCG- -5'
27584 5' -59.3 NC_005882.1 + 24253 0.66 0.35992
Target:  5'- uACCUGACCGUgauguucaagaagaaCCCGC-UCGGUA-CGUa -3'
miRNA:   3'- -UGGACUGGCG---------------GGGUGuAGUCGUcGCG- -5'
27584 5' -59.3 NC_005882.1 + 573 0.66 0.364251
Target:  5'- uUCUGuCCGCCCCaguggccggccauGCgGUCGGCAaucucGCGCc -3'
miRNA:   3'- uGGACuGGCGGGG-------------UG-UAGUCGU-----CGCG- -5'
27584 5' -59.3 NC_005882.1 + 18335 0.66 0.373906
Target:  5'- -gCUGACCGCggCCGCGUC-GCGuCGCa -3'
miRNA:   3'- ugGACUGGCGg-GGUGUAGuCGUcGCG- -5'
27584 5' -59.3 NC_005882.1 + 27609 0.66 0.373906
Target:  5'- gGCC--GCgGCCgCgGCGUCccuGCAGCGCa -3'
miRNA:   3'- -UGGacUGgCGG-GgUGUAGu--CGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 28268 0.66 0.377459
Target:  5'- cGCCggcGGCCGCgCaggcggucuccagcgUCACAUCGGCGGUGg -3'
miRNA:   3'- -UGGa--CUGGCG-G---------------GGUGUAGUCGUCGCg -5'
27584 5' -59.3 NC_005882.1 + 11901 0.66 0.382832
Target:  5'- uCCUGAUCGCCUUuguCGUCGcguuGCucGGCGCc -3'
miRNA:   3'- uGGACUGGCGGGGu--GUAGU----CG--UCGCG- -5'
27584 5' -59.3 NC_005882.1 + 25404 0.66 0.391899
Target:  5'- gGCCUcGGCCGCgUCGCcgacgAGCuGCGCg -3'
miRNA:   3'- -UGGA-CUGGCGgGGUGuag--UCGuCGCG- -5'
27584 5' -59.3 NC_005882.1 + 22622 0.67 0.331432
Target:  5'- cGCCggugcagucGCUGUCCgACGUCGacGCGGCGCa -3'
miRNA:   3'- -UGGac-------UGGCGGGgUGUAGU--CGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 30889 0.67 0.323375
Target:  5'- cGCCUGAUucucgggaCGCCCCAgGgCAGCGaucCGCa -3'
miRNA:   3'- -UGGACUG--------GCGGGGUgUaGUCGUc--GCG- -5'
27584 5' -59.3 NC_005882.1 + 28644 0.67 0.315465
Target:  5'- gGCCgcgGGCCaGCUCUcgACGgcgAGCAGCGCg -3'
miRNA:   3'- -UGGa--CUGG-CGGGG--UGUag-UCGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 3863 0.72 0.141999
Target:  5'- uGCUUGAgCGUCgCG-AUCGGCAGCGCg -3'
miRNA:   3'- -UGGACUgGCGGgGUgUAGUCGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 15743 0.71 0.163156
Target:  5'- gACCggUGACCGCCaaGUcgCGGCGGCGCc -3'
miRNA:   3'- -UGG--ACUGGCGGggUGuaGUCGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 4847 0.7 0.197526
Target:  5'- gAUCUGcuuuGCCGCCUCgaucaGCGagAGCGGCGCg -3'
miRNA:   3'- -UGGAC----UGGCGGGG-----UGUagUCGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 15386 0.7 0.214102
Target:  5'- uGCUUGAUCgGCuCCCGCGcuUCacgGGCGGCGCc -3'
miRNA:   3'- -UGGACUGG-CG-GGGUGU--AG---UCGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 32128 0.68 0.257443
Target:  5'- gGCCUGGggcgcgauaUCGUCCCGCGccagcUCAGUcGCGCc -3'
miRNA:   3'- -UGGACU---------GGCGGGGUGU-----AGUCGuCGCG- -5'
27584 5' -59.3 NC_005882.1 + 21051 0.68 0.27108
Target:  5'- gGCCUGaACCGCuUCCAguuCGUCGGCuucgaugguGGCGUg -3'
miRNA:   3'- -UGGAC-UGGCG-GGGU---GUAGUCG---------UCGCG- -5'
27584 5' -59.3 NC_005882.1 + 23340 0.68 0.27108
Target:  5'- cGCCUGgaGCCGCuCUCAUcgCGuGCGGCGg -3'
miRNA:   3'- -UGGAC--UGGCG-GGGUGuaGU-CGUCGCg -5'
27584 5' -59.3 NC_005882.1 + 24427 0.67 0.315465
Target:  5'- -gCUGAcuuCCGCgCCaACAUCGGCGGCu- -3'
miRNA:   3'- ugGACU---GGCGgGG-UGUAGUCGUCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.