miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27585 3' -52.2 NC_005882.1 + 22705 0.66 0.795145
Target:  5'- gCGGU-CUACGACUaCGG-CAGCGggACg -3'
miRNA:   3'- -GCUAuGGUGCUGA-GCCuGUCGUagUG- -5'
27585 3' -52.2 NC_005882.1 + 30073 0.66 0.774398
Target:  5'- gCGGUGCCGCcgccuuugccGGCcUGGACGGCGagCGCc -3'
miRNA:   3'- -GCUAUGGUG----------CUGaGCCUGUCGUa-GUG- -5'
27585 3' -52.2 NC_005882.1 + 20442 0.66 0.774398
Target:  5'- cCGcgGCCggcaGCGAUcCGGuCGGCGUCAUc -3'
miRNA:   3'- -GCuaUGG----UGCUGaGCCuGUCGUAGUG- -5'
27585 3' -52.2 NC_005882.1 + 27214 0.66 0.763775
Target:  5'- aGAgcACCGCGcGCcCGGcCAGCAUCAg -3'
miRNA:   3'- gCUa-UGGUGC-UGaGCCuGUCGUAGUg -5'
27585 3' -52.2 NC_005882.1 + 31132 0.66 0.763775
Target:  5'- aGGUGCCGCGaugacGCUCGGugAaccggauuuCAUCGCc -3'
miRNA:   3'- gCUAUGGUGC-----UGAGCCugUc--------GUAGUG- -5'
27585 3' -52.2 NC_005882.1 + 22692 0.66 0.753004
Target:  5'- ---cGCCGCgucGACgUCGGACAGCGacugCACc -3'
miRNA:   3'- gcuaUGGUG---CUG-AGCCUGUCGUa---GUG- -5'
27585 3' -52.2 NC_005882.1 + 12738 0.67 0.731068
Target:  5'- uGAUGC-GCG-CUUGuucGACGGCAUCGCg -3'
miRNA:   3'- gCUAUGgUGCuGAGC---CUGUCGUAGUG- -5'
27585 3' -52.2 NC_005882.1 + 26733 0.67 0.731068
Target:  5'- uGAU-CCGCGGCgUGGuCGGCuUCGCa -3'
miRNA:   3'- gCUAuGGUGCUGaGCCuGUCGuAGUG- -5'
27585 3' -52.2 NC_005882.1 + 28001 0.67 0.71993
Target:  5'- ---aGCCGCGGCUUGcccuGCAGCAgCGCg -3'
miRNA:   3'- gcuaUGGUGCUGAGCc---UGUCGUaGUG- -5'
27585 3' -52.2 NC_005882.1 + 10166 0.67 0.712075
Target:  5'- aCGAUGCugaaaguCACGuuguucgcggcacuCUUGGGCGGCGUCAUc -3'
miRNA:   3'- -GCUAUG-------GUGCu-------------GAGCCUGUCGUAGUG- -5'
27585 3' -52.2 NC_005882.1 + 26477 0.67 0.69738
Target:  5'- gCGAUGCguCAgGGCUgGGACaAGUAUCAg -3'
miRNA:   3'- -GCUAUG--GUgCUGAgCCUG-UCGUAGUg -5'
27585 3' -52.2 NC_005882.1 + 16607 0.67 0.69738
Target:  5'- cCGggACCACGGC---GACAGCAUCcuGCa -3'
miRNA:   3'- -GCuaUGGUGCUGagcCUGUCGUAG--UG- -5'
27585 3' -52.2 NC_005882.1 + 29441 0.68 0.685993
Target:  5'- uCGAUGCgaauaucccgaaUGCGGC-CGGugAGCGUCAg -3'
miRNA:   3'- -GCUAUG------------GUGCUGaGCCugUCGUAGUg -5'
27585 3' -52.2 NC_005882.1 + 11716 0.68 0.674551
Target:  5'- -cGUACgCGCGGC-CGGACAGCuAUCuCg -3'
miRNA:   3'- gcUAUG-GUGCUGaGCCUGUCG-UAGuG- -5'
27585 3' -52.2 NC_005882.1 + 1880 0.68 0.673403
Target:  5'- gGAUACCGCGagacGCUCGcGGcCAGCgaaagugcucgauGUCGCg -3'
miRNA:   3'- gCUAUGGUGC----UGAGC-CU-GUCG-------------UAGUG- -5'
27585 3' -52.2 NC_005882.1 + 18026 0.68 0.651545
Target:  5'- cCGGUGCCGCGGCgUGG-CAGCcUgACc -3'
miRNA:   3'- -GCUAUGGUGCUGaGCCuGUCGuAgUG- -5'
27585 3' -52.2 NC_005882.1 + 27169 0.69 0.605389
Target:  5'- gCGGUGCUcUGGCUCGGGC-GCG-CGCu -3'
miRNA:   3'- -GCUAUGGuGCUGAGCCUGuCGUaGUG- -5'
27585 3' -52.2 NC_005882.1 + 21283 0.69 0.582419
Target:  5'- uCGAUGCgGCGACggCGGcCGGCgacGUCAUc -3'
miRNA:   3'- -GCUAUGgUGCUGa-GCCuGUCG---UAGUG- -5'
27585 3' -52.2 NC_005882.1 + 28262 0.71 0.503921
Target:  5'- aGGUGCCGcCGGCggccgcgcaggCGGucucCAGCGUCACa -3'
miRNA:   3'- gCUAUGGU-GCUGa----------GCCu---GUCGUAGUG- -5'
27585 3' -52.2 NC_005882.1 + 27663 0.71 0.493058
Target:  5'- gGAcGCCGCGGCcgCGGcCuGCGUCGCc -3'
miRNA:   3'- gCUaUGGUGCUGa-GCCuGuCGUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.