miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27585 5' -57.2 NC_005882.1 + 31448 0.66 0.513003
Target:  5'- uCGCGGgcUGCGCCGgca-GCcGCGUCa -3'
miRNA:   3'- cGCGCU--ACGCGGCaucgCGaCGUAGc -5'
27585 5' -57.2 NC_005882.1 + 13475 0.66 0.502392
Target:  5'- cCGCGAaucgcUGCGCUGguaucugauucUGGCGCUGUAc-- -3'
miRNA:   3'- cGCGCU-----ACGCGGC-----------AUCGCGACGUagc -5'
27585 5' -57.2 NC_005882.1 + 22713 0.66 0.491877
Target:  5'- -gGCGAgcUGCggGCCGaacuGCGCcGCGUCGa -3'
miRNA:   3'- cgCGCU--ACG--CGGCau--CGCGaCGUAGC- -5'
27585 5' -57.2 NC_005882.1 + 18810 0.66 0.481465
Target:  5'- cGCGCGAUGCaggg-AGCGCaGCAggUCGa -3'
miRNA:   3'- -CGCGCUACGcggcaUCGCGaCGU--AGC- -5'
27585 5' -57.2 NC_005882.1 + 26612 0.66 0.481465
Target:  5'- cCGCGcgGCGCaCGUAGUcCUG-GUCGa -3'
miRNA:   3'- cGCGCuaCGCG-GCAUCGcGACgUAGC- -5'
27585 5' -57.2 NC_005882.1 + 27681 0.66 0.48043
Target:  5'- uGCGuUGAUGCGCUGcagGGaCGCcgcggccgcggccUGCGUCGc -3'
miRNA:   3'- -CGC-GCUACGCGGCa--UC-GCG-------------ACGUAGC- -5'
27585 5' -57.2 NC_005882.1 + 3385 0.66 0.471162
Target:  5'- aCGCu-UGCGCgCG-GGCGCUGCG-CGg -3'
miRNA:   3'- cGCGcuACGCG-GCaUCGCGACGUaGC- -5'
27585 5' -57.2 NC_005882.1 + 7255 0.66 0.460971
Target:  5'- uGCgGCGAacaUGCGUCGUAGUGUggaaGCGUg- -3'
miRNA:   3'- -CG-CGCU---ACGCGGCAUCGCGa---CGUAgc -5'
27585 5' -57.2 NC_005882.1 + 27581 0.66 0.460971
Target:  5'- cGCGCGcgGcCGCCGgcaUGGCGaCgcagGCcgCGg -3'
miRNA:   3'- -CGCGCuaC-GCGGC---AUCGC-Ga---CGuaGC- -5'
27585 5' -57.2 NC_005882.1 + 15685 0.66 0.460971
Target:  5'- -gGCGAcGcCGCCGUAGCgGUUGC-UCu -3'
miRNA:   3'- cgCGCUaC-GCGGCAUCG-CGACGuAGc -5'
27585 5' -57.2 NC_005882.1 + 10445 0.66 0.460971
Target:  5'- aGUGCu-UGCGUCGU-GCGCUGagAUCGc -3'
miRNA:   3'- -CGCGcuACGCGGCAuCGCGACg-UAGC- -5'
27585 5' -57.2 NC_005882.1 + 8945 0.67 0.421427
Target:  5'- -gGCGAaaucUGCGCCGacccggcaaaAGCGCUcGCAUUGc -3'
miRNA:   3'- cgCGCU----ACGCGGCa---------UCGCGA-CGUAGC- -5'
27585 5' -57.2 NC_005882.1 + 26047 0.67 0.421427
Target:  5'- cGCGCGGUugaaCGCCuccuucAGCGCcGCGUCGc -3'
miRNA:   3'- -CGCGCUAc---GCGGca----UCGCGaCGUAGC- -5'
27585 5' -57.2 NC_005882.1 + 19804 0.68 0.406191
Target:  5'- cGCGCGAgcGCGCCGgcgugacgacgacgGGCGCcgacacCGUCGa -3'
miRNA:   3'- -CGCGCUa-CGCGGCa-------------UCGCGac----GUAGC- -5'
27585 5' -57.2 NC_005882.1 + 32869 0.68 0.402436
Target:  5'- aGUGgGcgGCGCCGUuGUaGC-GCAUCGg -3'
miRNA:   3'- -CGCgCuaCGCGGCAuCG-CGaCGUAGC- -5'
27585 5' -57.2 NC_005882.1 + 17162 0.68 0.402436
Target:  5'- gGCGCGAccaGCGCCu--GCGCgucgGCAUUc -3'
miRNA:   3'- -CGCGCUa--CGCGGcauCGCGa---CGUAGc -5'
27585 5' -57.2 NC_005882.1 + 12523 0.68 0.398704
Target:  5'- cGCGCGGccagugugucgcgGCGgCGgccGGCGCUGCggCGa -3'
miRNA:   3'- -CGCGCUa------------CGCgGCa--UCGCGACGuaGC- -5'
27585 5' -57.2 NC_005882.1 + 23263 0.68 0.383997
Target:  5'- uGCGCGA-GCGUCGUGcCGaucggcGCAUCGa -3'
miRNA:   3'- -CGCGCUaCGCGGCAUcGCga----CGUAGC- -5'
27585 5' -57.2 NC_005882.1 + 17823 0.68 0.374991
Target:  5'- -gGUGccGCGUgGUGGCGCUGUcgCa -3'
miRNA:   3'- cgCGCuaCGCGgCAUCGCGACGuaGc -5'
27585 5' -57.2 NC_005882.1 + 17149 0.69 0.34884
Target:  5'- gGCGCGA-GUGCCGacgaGCUGC-UCGg -3'
miRNA:   3'- -CGCGCUaCGCGGCaucgCGACGuAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.