miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27585 5' -57.2 NC_005882.1 + 3385 0.66 0.471162
Target:  5'- aCGCu-UGCGCgCG-GGCGCUGCG-CGg -3'
miRNA:   3'- cGCGcuACGCG-GCaUCGCGACGUaGC- -5'
27585 5' -57.2 NC_005882.1 + 6643 0.72 0.202671
Target:  5'- cGUGCGgcGCGCCGUGcgucucggcGUGCUGCGccaagguuUCGa -3'
miRNA:   3'- -CGCGCuaCGCGGCAU---------CGCGACGU--------AGC- -5'
27585 5' -57.2 NC_005882.1 + 7255 0.66 0.460971
Target:  5'- uGCgGCGAacaUGCGUCGUAGUGUggaaGCGUg- -3'
miRNA:   3'- -CG-CGCU---ACGCGGCAUCGCGa---CGUAgc -5'
27585 5' -57.2 NC_005882.1 + 8682 0.74 0.162696
Target:  5'- gGCGC--UGCGUCGUuucGGCGCUGCucGUCGc -3'
miRNA:   3'- -CGCGcuACGCGGCA---UCGCGACG--UAGC- -5'
27585 5' -57.2 NC_005882.1 + 8945 0.67 0.421427
Target:  5'- -gGCGAaaucUGCGCCGacccggcaaaAGCGCUcGCAUUGc -3'
miRNA:   3'- cgCGCU----ACGCGGCa---------UCGCGA-CGUAGC- -5'
27585 5' -57.2 NC_005882.1 + 10445 0.66 0.460971
Target:  5'- aGUGCu-UGCGUCGU-GCGCUGagAUCGc -3'
miRNA:   3'- -CGCGcuACGCGGCAuCGCGACg-UAGC- -5'
27585 5' -57.2 NC_005882.1 + 10965 0.69 0.308211
Target:  5'- cGUGCGAaauccgcaUGCGCCcgcgcGCGCUGCGaCGa -3'
miRNA:   3'- -CGCGCU--------ACGCGGcau--CGCGACGUaGC- -5'
27585 5' -57.2 NC_005882.1 + 11841 0.7 0.278384
Target:  5'- cGCGCGGUgaucguccucgGCGUCGUAgucggcgucGCGCUGgGUCu -3'
miRNA:   3'- -CGCGCUA-----------CGCGGCAU---------CGCGACgUAGc -5'
27585 5' -57.2 NC_005882.1 + 12071 0.69 0.34884
Target:  5'- gGCGCGcgGaCGCCGUcAGCGUcguuggUGCGcgCGg -3'
miRNA:   3'- -CGCGCuaC-GCGGCA-UCGCG------ACGUa-GC- -5'
27585 5' -57.2 NC_005882.1 + 12523 0.68 0.398704
Target:  5'- cGCGCGGccagugugucgcgGCGgCGgccGGCGCUGCggCGa -3'
miRNA:   3'- -CGCGCUa------------CGCgGCa--UCGCGACGuaGC- -5'
27585 5' -57.2 NC_005882.1 + 12673 0.75 0.12278
Target:  5'- cGCGCGAUGcCGUCGaacaAGCGC-GCAUCa -3'
miRNA:   3'- -CGCGCUAC-GCGGCa---UCGCGaCGUAGc -5'
27585 5' -57.2 NC_005882.1 + 12776 0.76 0.103399
Target:  5'- -gGCGA-GCGCCGccgcGCGCUGCGUCu -3'
miRNA:   3'- cgCGCUaCGCGGCau--CGCGACGUAGc -5'
27585 5' -57.2 NC_005882.1 + 13475 0.66 0.502392
Target:  5'- cCGCGAaucgcUGCGCUGguaucugauucUGGCGCUGUAc-- -3'
miRNA:   3'- cGCGCU-----ACGCGGC-----------AUCGCGACGUagc -5'
27585 5' -57.2 NC_005882.1 + 13739 0.71 0.23802
Target:  5'- -gGCGAUGUcgacGCCGUAGCGCgUGagAUCGc -3'
miRNA:   3'- cgCGCUACG----CGGCAUCGCG-ACg-UAGC- -5'
27585 5' -57.2 NC_005882.1 + 15112 0.71 0.244391
Target:  5'- cGCGCGAcagccaUGCGCCGc--CGCUGUucuUCGg -3'
miRNA:   3'- -CGCGCU------ACGCGGCaucGCGACGu--AGC- -5'
27585 5' -57.2 NC_005882.1 + 15523 1.09 0.000348
Target:  5'- uGCGCGAUGCGCCGUAGCGCUGCAUCGc -3'
miRNA:   3'- -CGCGCUACGCGGCAUCGCGACGUAGC- -5'
27585 5' -57.2 NC_005882.1 + 15685 0.66 0.460971
Target:  5'- -gGCGAcGcCGCCGUAGCgGUUGC-UCu -3'
miRNA:   3'- cgCGCUaC-GCGGCAUCG-CGACGuAGc -5'
27585 5' -57.2 NC_005882.1 + 15732 0.73 0.176781
Target:  5'- -gGCGgcGuCGCCGUGGCGCuUGcCGUCGu -3'
miRNA:   3'- cgCGCuaC-GCGGCAUCGCG-AC-GUAGC- -5'
27585 5' -57.2 NC_005882.1 + 17149 0.69 0.34884
Target:  5'- gGCGCGA-GUGCCGacgaGCUGC-UCGg -3'
miRNA:   3'- -CGCGCUaCGCGGCaucgCGACGuAGC- -5'
27585 5' -57.2 NC_005882.1 + 17162 0.68 0.402436
Target:  5'- gGCGCGAccaGCGCCu--GCGCgucgGCAUUc -3'
miRNA:   3'- -CGCGCUa--CGCGGcauCGCGa---CGUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.