Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27585 | 5' | -57.2 | NC_005882.1 | + | 25580 | 0.76 | 0.11933 |
Target: 5'- gGCGCGcgGCGCC---GCGCUGCGUg- -3' miRNA: 3'- -CGCGCuaCGCGGcauCGCGACGUAgc -5' |
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27585 | 5' | -57.2 | NC_005882.1 | + | 13475 | 0.66 | 0.502392 |
Target: 5'- cCGCGAaucgcUGCGCUGguaucugauucUGGCGCUGUAc-- -3' miRNA: 3'- cGCGCU-----ACGCGGC-----------AUCGCGACGUagc -5' |
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27585 | 5' | -57.2 | NC_005882.1 | + | 27581 | 0.66 | 0.460971 |
Target: 5'- cGCGCGcgGcCGCCGgcaUGGCGaCgcagGCcgCGg -3' miRNA: 3'- -CGCGCuaC-GCGGC---AUCGC-Ga---CGuaGC- -5' |
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27585 | 5' | -57.2 | NC_005882.1 | + | 15685 | 0.66 | 0.460971 |
Target: 5'- -gGCGAcGcCGCCGUAGCgGUUGC-UCu -3' miRNA: 3'- cgCGCUaC-GCGGCAUCG-CGACGuAGc -5' |
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27585 | 5' | -57.2 | NC_005882.1 | + | 19804 | 0.68 | 0.406191 |
Target: 5'- cGCGCGAgcGCGCCGgcgugacgacgacgGGCGCcgacacCGUCGa -3' miRNA: 3'- -CGCGCUa-CGCGGCa-------------UCGCGac----GUAGC- -5' |
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27585 | 5' | -57.2 | NC_005882.1 | + | 12523 | 0.68 | 0.398704 |
Target: 5'- cGCGCGGccagugugucgcgGCGgCGgccGGCGCUGCggCGa -3' miRNA: 3'- -CGCGCUa------------CGCgGCa--UCGCGACGuaGC- -5' |
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27585 | 5' | -57.2 | NC_005882.1 | + | 17823 | 0.68 | 0.374991 |
Target: 5'- -gGUGccGCGUgGUGGCGCUGUcgCa -3' miRNA: 3'- cgCGCuaCGCGgCAUCGCGACGuaGc -5' |
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27585 | 5' | -57.2 | NC_005882.1 | + | 12071 | 0.69 | 0.34884 |
Target: 5'- gGCGCGcgGaCGCCGUcAGCGUcguuggUGCGcgCGg -3' miRNA: 3'- -CGCGCuaC-GCGGCA-UCGCG------ACGUa-GC- -5' |
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27585 | 5' | -57.2 | NC_005882.1 | + | 17149 | 0.69 | 0.34884 |
Target: 5'- gGCGCGA-GUGCCGacgaGCUGC-UCGg -3' miRNA: 3'- -CGCGCUaCGCGGCaucgCGACGuAGC- -5' |
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27585 | 5' | -57.2 | NC_005882.1 | + | 27011 | 0.69 | 0.340417 |
Target: 5'- gGCGCGgcGCGCuCGUcguuggccgcGCGCUGCucccuuUCGg -3' miRNA: 3'- -CGCGCuaCGCG-GCAu---------CGCGACGu-----AGC- -5' |
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27585 | 5' | -57.2 | NC_005882.1 | + | 12673 | 0.75 | 0.12278 |
Target: 5'- cGCGCGAUGcCGUCGaacaAGCGC-GCAUCa -3' miRNA: 3'- -CGCGCUAC-GCGGCa---UCGCGaCGUAGc -5' |
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27585 | 5' | -57.2 | NC_005882.1 | + | 18991 | 0.75 | 0.137522 |
Target: 5'- cGCGCGAcaacGCGCCGgcgUGGgGCUGgGUCGc -3' miRNA: 3'- -CGCGCUa---CGCGGC---AUCgCGACgUAGC- -5' |
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27585 | 5' | -57.2 | NC_005882.1 | + | 8682 | 0.74 | 0.162696 |
Target: 5'- gGCGC--UGCGUCGUuucGGCGCUGCucGUCGc -3' miRNA: 3'- -CGCGcuACGCGGCA---UCGCGACG--UAGC- -5' |
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27585 | 5' | -57.2 | NC_005882.1 | + | 6643 | 0.72 | 0.202671 |
Target: 5'- cGUGCGgcGCGCCGUGcgucucggcGUGCUGCGccaagguuUCGa -3' miRNA: 3'- -CGCGCuaCGCGGCAU---------CGCGACGU--------AGC- -5' |
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27585 | 5' | -57.2 | NC_005882.1 | + | 11841 | 0.7 | 0.278384 |
Target: 5'- cGCGCGGUgaucguccucgGCGUCGUAgucggcgucGCGCUGgGUCu -3' miRNA: 3'- -CGCGCUA-----------CGCGGCAU---------CGCGACgUAGc -5' |
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27585 | 5' | -57.2 | NC_005882.1 | + | 18189 | 0.7 | 0.299772 |
Target: 5'- gGCGCGAUGCGCaagaucgcgcaggCGcUGGUGCUG-GUCa -3' miRNA: 3'- -CGCGCUACGCG-------------GC-AUCGCGACgUAGc -5' |
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27585 | 5' | -57.2 | NC_005882.1 | + | 31012 | 0.69 | 0.324016 |
Target: 5'- aCGCGAUcCGCCGgugggagccGCGCUGCgagGUCGu -3' miRNA: 3'- cGCGCUAcGCGGCau-------CGCGACG---UAGC- -5' |
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27585 | 5' | -57.2 | NC_005882.1 | + | 31448 | 0.66 | 0.513003 |
Target: 5'- uCGCGGgcUGCGCCGgca-GCcGCGUCa -3' miRNA: 3'- cGCGCU--ACGCGGCaucgCGaCGUAGc -5' |
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27585 | 5' | -57.2 | NC_005882.1 | + | 12776 | 0.76 | 0.103399 |
Target: 5'- -gGCGA-GCGCCGccgcGCGCUGCGUCu -3' miRNA: 3'- cgCGCUaCGCGGCau--CGCGACGUAGc -5' |
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27585 | 5' | -57.2 | NC_005882.1 | + | 21473 | 0.74 | 0.141454 |
Target: 5'- gGCGcCGGUGCGCCGUAGuCGgUG-GUCGu -3' miRNA: 3'- -CGC-GCUACGCGGCAUC-GCgACgUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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