miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27587 3' -54.5 NC_005882.1 + 32207 0.66 0.686081
Target:  5'- -aCGGCG--CGACUgagcuggCGCGGgACGAUa -3'
miRNA:   3'- caGCCGCuaGCUGAa------GCGCUgUGCUG- -5'
27587 3' -54.5 NC_005882.1 + 23496 0.66 0.686081
Target:  5'- -gCGGcCGcUCGACgccCGUGACGcCGACg -3'
miRNA:   3'- caGCC-GCuAGCUGaa-GCGCUGU-GCUG- -5'
27587 3' -54.5 NC_005882.1 + 31480 0.66 0.686081
Target:  5'- uGUCGaGaCGAgCGACggcgcugucucgUUCGCGAC-CGACa -3'
miRNA:   3'- -CAGC-C-GCUaGCUG------------AAGCGCUGuGCUG- -5'
27587 3' -54.5 NC_005882.1 + 2196 0.66 0.674882
Target:  5'- cUCGuCGAucaUCGACUUCGCGGC-CuGCa -3'
miRNA:   3'- cAGCcGCU---AGCUGAAGCGCUGuGcUG- -5'
27587 3' -54.5 NC_005882.1 + 28941 0.66 0.674882
Target:  5'- aUCGGUGAUCGACacCcCGACGucgguugcCGACg -3'
miRNA:   3'- cAGCCGCUAGCUGaaGcGCUGU--------GCUG- -5'
27587 3' -54.5 NC_005882.1 + 10545 0.66 0.674882
Target:  5'- -aCaGCG-UCGACUacggugaGCGGCGCGACu -3'
miRNA:   3'- caGcCGCuAGCUGAag-----CGCUGUGCUG- -5'
27587 3' -54.5 NC_005882.1 + 35911 0.66 0.67376
Target:  5'- uUCGGCG--UGACUUUccggcagaaggcaGCGAuCGCGACg -3'
miRNA:   3'- cAGCCGCuaGCUGAAG-------------CGCU-GUGCUG- -5'
27587 3' -54.5 NC_005882.1 + 21457 0.66 0.671514
Target:  5'- aGUCGGUGGUCGugucguucgucaGCUcaaugagcguccguUC-CGGCACGGCc -3'
miRNA:   3'- -CAGCCGCUAGC------------UGA--------------AGcGCUGUGCUG- -5'
27587 3' -54.5 NC_005882.1 + 17200 0.66 0.668142
Target:  5'- cGUCGGCacUCGcgccguucgcaauccGCUUUaaaaGCGGCGCGACc -3'
miRNA:   3'- -CAGCCGcuAGC---------------UGAAG----CGCUGUGCUG- -5'
27587 3' -54.5 NC_005882.1 + 31545 0.66 0.663641
Target:  5'- aGUUGuCGAUCGACguggcCGCGACguGCGAa -3'
miRNA:   3'- -CAGCcGCUAGCUGaa---GCGCUG--UGCUg -5'
27587 3' -54.5 NC_005882.1 + 26270 0.66 0.663641
Target:  5'- cGUCGaUGGUCGcCUUCGCGuucauguGCGACa -3'
miRNA:   3'- -CAGCcGCUAGCuGAAGCGCug-----UGCUG- -5'
27587 3' -54.5 NC_005882.1 + 27869 0.66 0.663641
Target:  5'- -gCGGCGcUCGcGCUUCGCGAgCAgGuCg -3'
miRNA:   3'- caGCCGCuAGC-UGAAGCGCU-GUgCuG- -5'
27587 3' -54.5 NC_005882.1 + 25461 0.66 0.663641
Target:  5'- cGUCGGCGAcgCGGCcgaggccauucagcgUCGUGcgcgugccggaaaGCGCGGCg -3'
miRNA:   3'- -CAGCCGCUa-GCUGa--------------AGCGC-------------UGUGCUG- -5'
27587 3' -54.5 NC_005882.1 + 15413 0.66 0.663641
Target:  5'- -gCGGCGccuUCGACgcgCGgGGCAaCGGCc -3'
miRNA:   3'- caGCCGCu--AGCUGaa-GCgCUGU-GCUG- -5'
27587 3' -54.5 NC_005882.1 + 15245 0.66 0.652369
Target:  5'- -aCGGCGAg-GACUUCG-GACggacugGCGACc -3'
miRNA:   3'- caGCCGCUagCUGAAGCgCUG------UGCUG- -5'
27587 3' -54.5 NC_005882.1 + 29615 0.66 0.652369
Target:  5'- --aGGCGaAUCGACUUCaaguCGGCGCG-Cu -3'
miRNA:   3'- cagCCGC-UAGCUGAAGc---GCUGUGCuG- -5'
27587 3' -54.5 NC_005882.1 + 23182 0.66 0.652369
Target:  5'- --gGGCGAUCGcguACaUCGaugcgccgauCGGCACGACg -3'
miRNA:   3'- cagCCGCUAGC---UGaAGC----------GCUGUGCUG- -5'
27587 3' -54.5 NC_005882.1 + 28302 0.66 0.641077
Target:  5'- aUCGGCGGU-GGCcaccgCGCGagGCACGAUu -3'
miRNA:   3'- cAGCCGCUAgCUGaa---GCGC--UGUGCUG- -5'
27587 3' -54.5 NC_005882.1 + 20922 0.66 0.641077
Target:  5'- -aCGGCuGAUCG-C-UCGCGGCAcCGAa -3'
miRNA:   3'- caGCCG-CUAGCuGaAGCGCUGU-GCUg -5'
27587 3' -54.5 NC_005882.1 + 17880 0.66 0.641077
Target:  5'- --aGGCGGcCGGCgacCGCcucGGCACGACg -3'
miRNA:   3'- cagCCGCUaGCUGaa-GCG---CUGUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.