miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27589 3' -58.4 NC_005882.1 + 18680 0.66 0.469099
Target:  5'- cGGCUCGUCGaCAgguuaGCgGCgGUUCGCu -3'
miRNA:   3'- -UCGAGCAGCcGUgag--CG-CGgCAAGCG- -5'
27589 3' -58.4 NC_005882.1 + 31373 0.66 0.469099
Target:  5'- gAGCUgGUCGGCGugaCGCGgCUGccggCGCa -3'
miRNA:   3'- -UCGAgCAGCCGUga-GCGC-GGCaa--GCG- -5'
27589 3' -58.4 NC_005882.1 + 25825 0.66 0.469099
Target:  5'- aAGg-CGUCGGCACacuggUCGCuGCCGgcauggaCGCg -3'
miRNA:   3'- -UCgaGCAGCCGUG-----AGCG-CGGCaa-----GCG- -5'
27589 3' -58.4 NC_005882.1 + 3613 0.66 0.459078
Target:  5'- cAGCgCGUCGacgcCGCUUGCGUCGaucacgUCGCc -3'
miRNA:   3'- -UCGaGCAGCc---GUGAGCGCGGCa-----AGCG- -5'
27589 3' -58.4 NC_005882.1 + 19642 0.66 0.459078
Target:  5'- uGCUCGcuguggCGGCGgUCGUccGCCGccUUGCg -3'
miRNA:   3'- uCGAGCa-----GCCGUgAGCG--CGGCa-AGCG- -5'
27589 3' -58.4 NC_005882.1 + 27982 0.66 0.458082
Target:  5'- aAGCUCGacgagauUCGGa--UCGCGCUG-UCGUu -3'
miRNA:   3'- -UCGAGC-------AGCCgugAGCGCGGCaAGCG- -5'
27589 3' -58.4 NC_005882.1 + 11518 0.66 0.449173
Target:  5'- cGGCUUuagcgGUCGGCuugCGCGgCGUUCcuGCg -3'
miRNA:   3'- -UCGAG-----CAGCCGugaGCGCgGCAAG--CG- -5'
27589 3' -58.4 NC_005882.1 + 11920 0.66 0.439387
Target:  5'- cGCgUUGcUCGGCGCcgcCGCGCCcGUggccgCGCa -3'
miRNA:   3'- uCG-AGC-AGCCGUGa--GCGCGG-CAa----GCG- -5'
27589 3' -58.4 NC_005882.1 + 29863 0.66 0.439387
Target:  5'- aGGUUCGUcCGGuCAa--GCGCCGcgCGUg -3'
miRNA:   3'- -UCGAGCA-GCC-GUgagCGCGGCaaGCG- -5'
27589 3' -58.4 NC_005882.1 + 19623 0.66 0.429724
Target:  5'- cAGCUCGUcaagggCGGCacGCUCGCcCCGaa-GCa -3'
miRNA:   3'- -UCGAGCA------GCCG--UGAGCGcGGCaagCG- -5'
27589 3' -58.4 NC_005882.1 + 23531 0.66 0.429724
Target:  5'- cAGCUCGUaCGGC--UCGgGCCug-CGCc -3'
miRNA:   3'- -UCGAGCA-GCCGugAGCgCGGcaaGCG- -5'
27589 3' -58.4 NC_005882.1 + 23218 0.66 0.429724
Target:  5'- cGCUCGcgcaGGCGCU-G-GCCGggCGCg -3'
miRNA:   3'- uCGAGCag--CCGUGAgCgCGGCaaGCG- -5'
27589 3' -58.4 NC_005882.1 + 34590 0.66 0.420187
Target:  5'- cGCUCGgCGGUGC-CGCGuuCCGaaUCGCa -3'
miRNA:   3'- uCGAGCaGCCGUGaGCGC--GGCa-AGCG- -5'
27589 3' -58.4 NC_005882.1 + 16470 0.66 0.420187
Target:  5'- uGCUgGUCGGCAagcaucCGCGCag--CGCa -3'
miRNA:   3'- uCGAgCAGCCGUga----GCGCGgcaaGCG- -5'
27589 3' -58.4 NC_005882.1 + 6628 0.66 0.41924
Target:  5'- cAGCcaugaagUCGUCGuGCGg-CGCGCCGUgCGUc -3'
miRNA:   3'- -UCG-------AGCAGC-CGUgaGCGCGGCAaGCG- -5'
27589 3' -58.4 NC_005882.1 + 15999 0.67 0.410779
Target:  5'- cGCaCGUCGGCggguGCgUGCGCCGc-CGCa -3'
miRNA:   3'- uCGaGCAGCCG----UGaGCGCGGCaaGCG- -5'
27589 3' -58.4 NC_005882.1 + 15069 0.67 0.410779
Target:  5'- cAGCUCuuccUCaGCAUcCGCGCCGUacgacgCGCg -3'
miRNA:   3'- -UCGAGc---AGcCGUGaGCGCGGCAa-----GCG- -5'
27589 3' -58.4 NC_005882.1 + 12826 0.67 0.401503
Target:  5'- cAGUUCGUCGGauucgaGCgCGUGCCGg--GCu -3'
miRNA:   3'- -UCGAGCAGCCg-----UGaGCGCGGCaagCG- -5'
27589 3' -58.4 NC_005882.1 + 15633 0.67 0.392362
Target:  5'- gAGCaCGUCGGCAUccuUCGggagGCCGUcgaUCGUg -3'
miRNA:   3'- -UCGaGCAGCCGUG---AGCg---CGGCA---AGCG- -5'
27589 3' -58.4 NC_005882.1 + 19874 0.67 0.391455
Target:  5'- cGGCgccCGUCGucgucacgccggcGCGCUCGCGCguggCGUgcUCGCc -3'
miRNA:   3'- -UCGa--GCAGC-------------CGUGAGCGCG----GCA--AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.