miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27589 3' -58.4 NC_005882.1 + 23218 0.66 0.429724
Target:  5'- cGCUCGcgcaGGCGCU-G-GCCGggCGCg -3'
miRNA:   3'- uCGAGCag--CCGUGAgCgCGGCaaGCG- -5'
27589 3' -58.4 NC_005882.1 + 27136 0.68 0.357177
Target:  5'- cAGCUCGUgaaCGGC-CUgaUGCugGCCGggCGCg -3'
miRNA:   3'- -UCGAGCA---GCCGuGA--GCG--CGGCaaGCG- -5'
27589 3' -58.4 NC_005882.1 + 10837 0.67 0.365763
Target:  5'- cGCUCGUcgcugCGGgGCUCGUgacgguGCUGUcCGCg -3'
miRNA:   3'- uCGAGCA-----GCCgUGAGCG------CGGCAaGCG- -5'
27589 3' -58.4 NC_005882.1 + 16192 0.67 0.383356
Target:  5'- gGGCaagGUCGGCAacuacaUCGUGCCGaUCGa -3'
miRNA:   3'- -UCGag-CAGCCGUg-----AGCGCGGCaAGCg -5'
27589 3' -58.4 NC_005882.1 + 15999 0.67 0.410779
Target:  5'- cGCaCGUCGGCggguGCgUGCGCCGc-CGCa -3'
miRNA:   3'- uCGaGCAGCCG----UGaGCGCGGCaaGCG- -5'
27589 3' -58.4 NC_005882.1 + 6628 0.66 0.41924
Target:  5'- cAGCcaugaagUCGUCGuGCGg-CGCGCCGUgCGUc -3'
miRNA:   3'- -UCG-------AGCAGC-CGUgaGCGCGGCAaGCG- -5'
27589 3' -58.4 NC_005882.1 + 16470 0.66 0.420187
Target:  5'- uGCUgGUCGGCAagcaucCGCGCag--CGCa -3'
miRNA:   3'- uCGAgCAGCCGUga----GCGCGgcaaGCG- -5'
27589 3' -58.4 NC_005882.1 + 34590 0.66 0.420187
Target:  5'- cGCUCGgCGGUGC-CGCGuuCCGaaUCGCa -3'
miRNA:   3'- uCGAGCaGCCGUGaGCGC--GGCa-AGCG- -5'
27589 3' -58.4 NC_005882.1 + 19623 0.66 0.429724
Target:  5'- cAGCUCGUcaagggCGGCacGCUCGCcCCGaa-GCa -3'
miRNA:   3'- -UCGAGCA------GCCG--UGAGCGcGGCaagCG- -5'
27589 3' -58.4 NC_005882.1 + 21066 0.68 0.348734
Target:  5'- cAGUUCGUCGGCuucgaUgGUGgCGUgugCGCa -3'
miRNA:   3'- -UCGAGCAGCCGug---AgCGCgGCAa--GCG- -5'
27589 3' -58.4 NC_005882.1 + 9106 0.68 0.348734
Target:  5'- gGGCU-GUCGGCACcguggaaagUGCcgacuagguuGCCGUUCGUg -3'
miRNA:   3'- -UCGAgCAGCCGUGa--------GCG----------CGGCAAGCG- -5'
27589 3' -58.4 NC_005882.1 + 10889 0.68 0.332278
Target:  5'- gGGUUCGUC-GCAg-CGCGCgCGggCGCa -3'
miRNA:   3'- -UCGAGCAGcCGUgaGCGCG-GCaaGCG- -5'
27589 3' -58.4 NC_005882.1 + 6357 0.75 0.111458
Target:  5'- cAGCUCG-CGGCAggcCGCGUCGUagaUCGCa -3'
miRNA:   3'- -UCGAGCaGCCGUga-GCGCGGCA---AGCG- -5'
27589 3' -58.4 NC_005882.1 + 11660 0.75 0.111458
Target:  5'- gAGuCUCGUCaGC-CUCGCgGCCGUcgUCGCg -3'
miRNA:   3'- -UC-GAGCAGcCGuGAGCG-CGGCA--AGCG- -5'
27589 3' -58.4 NC_005882.1 + 598 0.74 0.127916
Target:  5'- uGCg-GUCGGCAauCUCGCGCCcgagcugGUUCGCc -3'
miRNA:   3'- uCGagCAGCCGU--GAGCGCGG-------CAAGCG- -5'
27589 3' -58.4 NC_005882.1 + 12720 0.72 0.17857
Target:  5'- cAGCgcgCGgCGGCGCUCGCcggcgacCUGUUCGCc -3'
miRNA:   3'- -UCGa--GCaGCCGUGAGCGc------GGCAAGCG- -5'
27589 3' -58.4 NC_005882.1 + 23427 0.71 0.221212
Target:  5'- cAGCUCGUCGGCgucACggGCGUCGa--GCg -3'
miRNA:   3'- -UCGAGCAGCCG---UGagCGCGGCaagCG- -5'
27589 3' -58.4 NC_005882.1 + 393 0.7 0.252067
Target:  5'- aGGUcgCGUUGGCGagcggcgaucucCUCGCGCCGgacCGCc -3'
miRNA:   3'- -UCGa-GCAGCCGU------------GAGCGCGGCaa-GCG- -5'
27589 3' -58.4 NC_005882.1 + 29162 0.69 0.286378
Target:  5'- cGCUgaaGaUCGGCuACgccggCGCGCCGUugcUCGCg -3'
miRNA:   3'- uCGAg--C-AGCCG-UGa----GCGCGGCA---AGCG- -5'
27589 3' -58.4 NC_005882.1 + 22584 0.69 0.293668
Target:  5'- cGGCUUGaUCGGCAC-CGCaCCGaUCGg -3'
miRNA:   3'- -UCGAGC-AGCCGUGaGCGcGGCaAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.