miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27589 5' -56 NC_005882.1 + 12406 0.66 0.521472
Target:  5'- -cGAAccAGCGuuGcCGAUCGGCGCCgccgGCa -3'
miRNA:   3'- aaUUU--UCGCcgC-GCUGGUCGCGGa---CG- -5'
27589 5' -56 NC_005882.1 + 1581 0.66 0.518177
Target:  5'- -----uGCGGCGauCGACCAGgacacgaaagcaauCGCaCUGCg -3'
miRNA:   3'- aauuuuCGCCGC--GCUGGUC--------------GCG-GACG- -5'
27589 5' -56 NC_005882.1 + 28533 0.66 0.51052
Target:  5'- --cGAGGCGGC-CGGCauccugcGCGCCaGCa -3'
miRNA:   3'- aauUUUCGCCGcGCUGgu-----CGCGGaCG- -5'
27589 5' -56 NC_005882.1 + 15763 0.66 0.51052
Target:  5'- ----cGGCGGCGCcgcuCCAGCGUCc-- -3'
miRNA:   3'- aauuuUCGCCGCGcu--GGUCGCGGacg -5'
27589 5' -56 NC_005882.1 + 21080 0.66 0.499664
Target:  5'- -cGAuGGUGGCGUGugcgcaGCCGGCGCgaagGCg -3'
miRNA:   3'- aaUUuUCGCCGCGC------UGGUCGCGga--CG- -5'
27589 5' -56 NC_005882.1 + 25104 0.66 0.499664
Target:  5'- -----uGCGGC-CGGCUcgGGCGCCggGCc -3'
miRNA:   3'- aauuuuCGCCGcGCUGG--UCGCGGa-CG- -5'
27589 5' -56 NC_005882.1 + 11986 0.66 0.488913
Target:  5'- ----cGGCcacgGGCGCGG-CGGCGCCgaGCa -3'
miRNA:   3'- aauuuUCG----CCGCGCUgGUCGCGGa-CG- -5'
27589 5' -56 NC_005882.1 + 13776 0.66 0.488913
Target:  5'- ----cAGCGGCGUG-Caa-CGCCUGCc -3'
miRNA:   3'- aauuuUCGCCGCGCuGgucGCGGACG- -5'
27589 5' -56 NC_005882.1 + 21422 0.66 0.478271
Target:  5'- ------aCGGCGC-ACCGGCGCCg-- -3'
miRNA:   3'- aauuuucGCCGCGcUGGUCGCGGacg -5'
27589 5' -56 NC_005882.1 + 18181 0.67 0.468791
Target:  5'- -aGAAGGCuGGCGCGAUgcgcaagaucgcgcaGGCGCUggUGCu -3'
miRNA:   3'- aaUUUUCG-CCGCGCUGg--------------UCGCGG--ACG- -5'
27589 5' -56 NC_005882.1 + 5139 0.67 0.466698
Target:  5'- ----cGGCGGCaCGccgauacGCCAGCGCagcaUGCg -3'
miRNA:   3'- aauuuUCGCCGcGC-------UGGUCGCGg---ACG- -5'
27589 5' -56 NC_005882.1 + 17275 0.67 0.457338
Target:  5'- --uGAAGCGGU-CGACCucGGCuaCUGCa -3'
miRNA:   3'- aauUUUCGCCGcGCUGG--UCGcgGACG- -5'
27589 5' -56 NC_005882.1 + 9327 0.67 0.457338
Target:  5'- -gAAAGGCGaGCGUucGCCGGaCGCCaGCu -3'
miRNA:   3'- aaUUUUCGC-CGCGc-UGGUC-GCGGaCG- -5'
27589 5' -56 NC_005882.1 + 33031 0.67 0.457338
Target:  5'- ----uAGCGcGUGCGGCCgccgAGCugcuucGCCUGCu -3'
miRNA:   3'- aauuuUCGC-CGCGCUGG----UCG------CGGACG- -5'
27589 5' -56 NC_005882.1 + 25740 0.67 0.457338
Target:  5'- -cGAAGGUGGCGgccugcCGAaCAGCGCCgauuacggGCg -3'
miRNA:   3'- aaUUUUCGCCGC------GCUgGUCGCGGa-------CG- -5'
27589 5' -56 NC_005882.1 + 8401 0.67 0.447057
Target:  5'- ---cGAGCGGCGCaaucUCAGCGUCgaacGCa -3'
miRNA:   3'- aauuUUCGCCGCGcu--GGUCGCGGa---CG- -5'
27589 5' -56 NC_005882.1 + 14256 0.67 0.436906
Target:  5'- ----cGGCGGcCGCuuCCGcgcGUGCCUGCa -3'
miRNA:   3'- aauuuUCGCC-GCGcuGGU---CGCGGACG- -5'
27589 5' -56 NC_005882.1 + 27618 0.68 0.417009
Target:  5'- -----cGCGGCGaccgcCGACgAGCGCCcgaUGCc -3'
miRNA:   3'- aauuuuCGCCGC-----GCUGgUCGCGG---ACG- -5'
27589 5' -56 NC_005882.1 + 26140 0.68 0.417009
Target:  5'- --cGAAGuCGGcCGCGAa-GGCGCCgGCa -3'
miRNA:   3'- aauUUUC-GCC-GCGCUggUCGCGGaCG- -5'
27589 5' -56 NC_005882.1 + 1240 0.68 0.417009
Target:  5'- ----cGGCGGgaaccccucgaUGCGGCCGGCGuuaaacgcauCCUGCg -3'
miRNA:   3'- aauuuUCGCC-----------GCGCUGGUCGC----------GGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.