miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27589 5' -56 NC_005882.1 + 1240 0.68 0.417009
Target:  5'- ----cGGCGGgaaccccucgaUGCGGCCGGCGuuaaacgcauCCUGCg -3'
miRNA:   3'- aauuuUCGCC-----------GCGCUGGUCGC----------GGACG- -5'
27589 5' -56 NC_005882.1 + 1581 0.66 0.518177
Target:  5'- -----uGCGGCGauCGACCAGgacacgaaagcaauCGCaCUGCg -3'
miRNA:   3'- aauuuuCGCCGC--GCUGGUC--------------GCG-GACG- -5'
27589 5' -56 NC_005882.1 + 3474 0.7 0.318118
Target:  5'- ----cGGCGGUGaCGACCGGCacGCCcagGCc -3'
miRNA:   3'- aauuuUCGCCGC-GCUGGUCG--CGGa--CG- -5'
27589 5' -56 NC_005882.1 + 3867 0.7 0.302147
Target:  5'- ---uGAGCGuCGCGAUcggCAGCGCgUGCg -3'
miRNA:   3'- aauuUUCGCcGCGCUG---GUCGCGgACG- -5'
27589 5' -56 NC_005882.1 + 4871 0.71 0.244456
Target:  5'- -cGAGAGCGGCGCGAguUCGacGCGCg-GCg -3'
miRNA:   3'- aaUUUUCGCCGCGCU--GGU--CGCGgaCG- -5'
27589 5' -56 NC_005882.1 + 5139 0.67 0.466698
Target:  5'- ----cGGCGGCaCGccgauacGCCAGCGCagcaUGCg -3'
miRNA:   3'- aauuuUCGCCGcGC-------UGGUCGCGg---ACG- -5'
27589 5' -56 NC_005882.1 + 6277 0.68 0.388227
Target:  5'- ------cCGGCGuCGACaCGGCGUUUGCg -3'
miRNA:   3'- aauuuucGCCGC-GCUG-GUCGCGGACG- -5'
27589 5' -56 NC_005882.1 + 6398 0.68 0.417009
Target:  5'- -----cGUGGC-CGGCCGcGCGCgCUGCc -3'
miRNA:   3'- aauuuuCGCCGcGCUGGU-CGCG-GACG- -5'
27589 5' -56 NC_005882.1 + 6454 0.68 0.397675
Target:  5'- ----cAGCGcGCGCGGCCGGC-CacgGCa -3'
miRNA:   3'- aauuuUCGC-CGCGCUGGUCGcGga-CG- -5'
27589 5' -56 NC_005882.1 + 6645 0.69 0.36078
Target:  5'- -----uGCGGCGCG-CCGuGCGUCUcgGCg -3'
miRNA:   3'- aauuuuCGCCGCGCuGGU-CGCGGA--CG- -5'
27589 5' -56 NC_005882.1 + 8401 0.67 0.447057
Target:  5'- ---cGAGCGGCGCaaucUCAGCGUCgaacGCa -3'
miRNA:   3'- aauuUUCGCCGCGcu--GGUCGCGGa---CG- -5'
27589 5' -56 NC_005882.1 + 8744 0.75 0.127875
Target:  5'- ---cGAGCaGCGCcgaaacGACgCAGCGCCUGCg -3'
miRNA:   3'- aauuUUCGcCGCG------CUG-GUCGCGGACG- -5'
27589 5' -56 NC_005882.1 + 9327 0.67 0.457338
Target:  5'- -gAAAGGCGaGCGUucGCCGGaCGCCaGCu -3'
miRNA:   3'- aaUUUUCGC-CGCGc-UGGUC-GCGGaCG- -5'
27589 5' -56 NC_005882.1 + 9481 0.68 0.388227
Target:  5'- gUGAAAGCcGCuGCGAUUGGCGCgCUGg -3'
miRNA:   3'- aAUUUUCGcCG-CGCUGGUCGCG-GACg -5'
27589 5' -56 NC_005882.1 + 11635 0.68 0.40727
Target:  5'- aUGAucGCGGCGaCGAgCCAGCucgucaGCC-GCg -3'
miRNA:   3'- aAUUuuCGCCGC-GCU-GGUCG------CGGaCG- -5'
27589 5' -56 NC_005882.1 + 11986 0.66 0.488913
Target:  5'- ----cGGCcacgGGCGCGG-CGGCGCCgaGCa -3'
miRNA:   3'- aauuuUCG----CCGCGCUgGUCGCGGa-CG- -5'
27589 5' -56 NC_005882.1 + 12027 0.73 0.180383
Target:  5'- ----cAGCucGGCGCGguacGCCAGCGCCUcgGCg -3'
miRNA:   3'- aauuuUCG--CCGCGC----UGGUCGCGGA--CG- -5'
27589 5' -56 NC_005882.1 + 12234 0.68 0.40727
Target:  5'- cUGGGAGCGcaucacgGCGGCCGGUGCaUGCg -3'
miRNA:   3'- aAUUUUCGCcg-----CGCUGGUCGCGgACG- -5'
27589 5' -56 NC_005882.1 + 12406 0.66 0.521472
Target:  5'- -cGAAccAGCGuuGcCGAUCGGCGCCgccgGCa -3'
miRNA:   3'- aaUUU--UCGCcgC-GCUGGUCGCGGa---CG- -5'
27589 5' -56 NC_005882.1 + 12451 0.69 0.326338
Target:  5'- -gGAAAGCGGcCGCGugccgGCCGGCGUUgaaccGCu -3'
miRNA:   3'- aaUUUUCGCC-GCGC-----UGGUCGCGGa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.