miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27589 5' -56 NC_005882.1 + 16977 0.68 0.397675
Target:  5'- ---cGAGCGGcCGCuGCCGGUGUCcGCc -3'
miRNA:   3'- aauuUUCGCC-GCGcUGGUCGCGGaCG- -5'
27589 5' -56 NC_005882.1 + 28570 0.69 0.351937
Target:  5'- cUGGAuGCGGUcCGAUCGGCGCaagGCg -3'
miRNA:   3'- aAUUUuCGCCGcGCUGGUCGCGga-CG- -5'
27589 5' -56 NC_005882.1 + 6645 0.69 0.36078
Target:  5'- -----uGCGGCGCG-CCGuGCGUCUcgGCg -3'
miRNA:   3'- aauuuuCGCCGCGCuGGU-CGCGGA--CG- -5'
27589 5' -56 NC_005882.1 + 19574 0.68 0.369777
Target:  5'- --cAAGGCGGCGgaCGACCGcCGCCacaGCg -3'
miRNA:   3'- aauUUUCGCCGC--GCUGGUcGCGGa--CG- -5'
27589 5' -56 NC_005882.1 + 25499 0.68 0.369777
Target:  5'- ---cGAGCuGCGCGGCCAGUacgaccGCCUcgGCc -3'
miRNA:   3'- aauuUUCGcCGCGCUGGUCG------CGGA--CG- -5'
27589 5' -56 NC_005882.1 + 19032 0.68 0.378927
Target:  5'- ------uCGGCGuCGGCCGGCaaCCUGCa -3'
miRNA:   3'- aauuuucGCCGC-GCUGGUCGc-GGACG- -5'
27589 5' -56 NC_005882.1 + 23805 0.68 0.388227
Target:  5'- -gAGGAGCuG-GCGGCCGGCcaCCUGCu -3'
miRNA:   3'- aaUUUUCGcCgCGCUGGUCGc-GGACG- -5'
27589 5' -56 NC_005882.1 + 6277 0.68 0.388227
Target:  5'- ------cCGGCGuCGACaCGGCGUUUGCg -3'
miRNA:   3'- aauuuucGCCGC-GCUG-GUCGCGGACG- -5'
27589 5' -56 NC_005882.1 + 9481 0.68 0.388227
Target:  5'- gUGAAAGCcGCuGCGAUUGGCGCgCUGg -3'
miRNA:   3'- aAUUUUCGcCG-CGCUGGUCGCG-GACg -5'
27589 5' -56 NC_005882.1 + 31377 0.69 0.343248
Target:  5'- ----uGGuCGGCGUGACgCGGCuGCCgGCg -3'
miRNA:   3'- aauuuUC-GCCGCGCUG-GUCG-CGGaCG- -5'
27589 5' -56 NC_005882.1 + 25337 0.69 0.338109
Target:  5'- -aAAGAuCGGCGCGACgcuacucgguagcuuCGGCGCC-GCg -3'
miRNA:   3'- aaUUUUcGCCGCGCUG---------------GUCGCGGaCG- -5'
27589 5' -56 NC_005882.1 + 27013 0.7 0.318118
Target:  5'- -----cGCGGCGCGcucgucguugGCC-GCGCgCUGCu -3'
miRNA:   3'- aauuuuCGCCGCGC----------UGGuCGCG-GACG- -5'
27589 5' -56 NC_005882.1 + 12727 0.76 0.124203
Target:  5'- ----cGGCGGCGCucGCCGGCGaCCUGUu -3'
miRNA:   3'- aauuuUCGCCGCGc-UGGUCGC-GGACG- -5'
27589 5' -56 NC_005882.1 + 4871 0.71 0.244456
Target:  5'- -cGAGAGCGGCGCGAguUCGacGCGCg-GCg -3'
miRNA:   3'- aaUUUUCGCCGCGCU--GGU--CGCGgaCG- -5'
27589 5' -56 NC_005882.1 + 21287 0.71 0.264239
Target:  5'- -----uGCGGCgacgGCGGCCGGCGacgucauccgcauCCUGCg -3'
miRNA:   3'- aauuuuCGCCG----CGCUGGUCGC-------------GGACG- -5'
27589 5' -56 NC_005882.1 + 26360 0.7 0.286801
Target:  5'- aUGAAgcAGUGGaaaGCGGCgGGCGCCaaggGCg -3'
miRNA:   3'- aAUUU--UCGCCg--CGCUGgUCGCGGa---CG- -5'
27589 5' -56 NC_005882.1 + 3867 0.7 0.302147
Target:  5'- ---uGAGCGuCGCGAUcggCAGCGCgUGCg -3'
miRNA:   3'- aauuUUCGCcGCGCUG---GUCGCGgACG- -5'
27589 5' -56 NC_005882.1 + 3474 0.7 0.318118
Target:  5'- ----cGGCGGUGaCGACCGGCacGCCcagGCc -3'
miRNA:   3'- aauuuUCGCCGC-GCUGGUCG--CGGa--CG- -5'
27589 5' -56 NC_005882.1 + 26943 0.7 0.318118
Target:  5'- --uGGGGCgGGCGCGGCCGGCaaguucgcgGCCgugaucggGCg -3'
miRNA:   3'- aauUUUCG-CCGCGCUGGUCG---------CGGa-------CG- -5'
27589 5' -56 NC_005882.1 + 25557 0.7 0.318118
Target:  5'- ---cAAGCGGCccuuGCGACCcggcuggcgcgcGGCGCC-GCg -3'
miRNA:   3'- aauuUUCGCCG----CGCUGG------------UCGCGGaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.