miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2759 5' -52.9 NC_001491.2 + 137729 0.66 0.976413
Target:  5'- gCGcCCGCGGguccccgGGGCGGggCGGCGUCGc -3'
miRNA:   3'- -GC-GGCGUUaug----UCUGUCa-GUCGCAGC- -5'
2759 5' -52.9 NC_001491.2 + 144766 0.66 0.973809
Target:  5'- cCGCCGgGGUGgAGAgCGG--AGCGUCGu -3'
miRNA:   3'- -GCGGCgUUAUgUCU-GUCagUCGCAGC- -5'
2759 5' -52.9 NC_001491.2 + 143855 0.66 0.971002
Target:  5'- gGCCGUugaugAUGGGCGGUgGGCGUg- -3'
miRNA:   3'- gCGGCGuua--UGUCUGUCAgUCGCAgc -5'
2759 5' -52.9 NC_001491.2 + 57651 0.66 0.971002
Target:  5'- gGCCGUAGaACAGACAGU-GGCa--- -3'
miRNA:   3'- gCGGCGUUaUGUCUGUCAgUCGcagc -5'
2759 5' -52.9 NC_001491.2 + 138502 0.66 0.967985
Target:  5'- gGuCCGCGcUGCuGGCAucggCGGCGUCGg -3'
miRNA:   3'- gC-GGCGUuAUGuCUGUca--GUCGCAGC- -5'
2759 5' -52.9 NC_001491.2 + 135674 0.67 0.948252
Target:  5'- gCGCCGCGcacGUGCAGAUaauaaccagcaaaaAGgcgaggUAGUGUCGa -3'
miRNA:   3'- -GCGGCGU---UAUGUCUG--------------UCa-----GUCGCAGC- -5'
2759 5' -52.9 NC_001491.2 + 65337 0.68 0.945151
Target:  5'- gGCUaGCAGU-CAGACGGUCGacgccaguGCGUCc -3'
miRNA:   3'- gCGG-CGUUAuGUCUGUCAGU--------CGCAGc -5'
2759 5' -52.9 NC_001491.2 + 146503 0.68 0.945151
Target:  5'- gGCCGCGGccGCGG-CAGcCuuGCGUCGg -3'
miRNA:   3'- gCGGCGUUa-UGUCuGUCaGu-CGCAGC- -5'
2759 5' -52.9 NC_001491.2 + 135243 0.68 0.942398
Target:  5'- aGCUGCAgguguguuguuccggGUGCAGGCAGgccaUGGCuGUCGg -3'
miRNA:   3'- gCGGCGU---------------UAUGUCUGUCa---GUCG-CAGC- -5'
2759 5' -52.9 NC_001491.2 + 53261 0.68 0.935631
Target:  5'- aCGCCGCAGgaucuggcgcUACuucugaaaacggAGGCGGgaagccCGGCGUCGg -3'
miRNA:   3'- -GCGGCGUU----------AUG------------UCUGUCa-----GUCGCAGC- -5'
2759 5' -52.9 NC_001491.2 + 68739 0.69 0.901136
Target:  5'- uGCCGCGcGUGCAG-CGGagAGCGcCGa -3'
miRNA:   3'- gCGGCGU-UAUGUCuGUCagUCGCaGC- -5'
2759 5' -52.9 NC_001491.2 + 32551 0.69 0.894529
Target:  5'- gGCCGCGcUGuCGGAacuGUCAGUGUCc -3'
miRNA:   3'- gCGGCGUuAU-GUCUgu-CAGUCGCAGc -5'
2759 5' -52.9 NC_001491.2 + 46500 0.7 0.849242
Target:  5'- aCGCUGCuguuugggggacaGGUcCAGACuGUCGGCGUCc -3'
miRNA:   3'- -GCGGCG-------------UUAuGUCUGuCAGUCGCAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.