miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27590 3' -53.3 NC_005882.1 + 24979 0.66 0.670613
Target:  5'- -cUCGGaCGGCugaauCUUCAgcacCAGUAGCa -3'
miRNA:   3'- gaAGCC-GCCGuc---GAAGUac--GUCAUCG- -5'
27590 3' -53.3 NC_005882.1 + 10674 0.66 0.647452
Target:  5'- -gUCGGCaGCGGCggag-GCGGcGGCa -3'
miRNA:   3'- gaAGCCGcCGUCGaaguaCGUCaUCG- -5'
27590 3' -53.3 NC_005882.1 + 28283 0.66 0.647452
Target:  5'- ---aGGCGGUcuccAGCgUCAcaucgGCGGUGGCc -3'
miRNA:   3'- gaagCCGCCG----UCGaAGUa----CGUCAUCG- -5'
27590 3' -53.3 NC_005882.1 + 18751 0.67 0.635842
Target:  5'- --aCGG-GGCAGCgUCAgggcGCuGUGGCu -3'
miRNA:   3'- gaaGCCgCCGUCGaAGUa---CGuCAUCG- -5'
27590 3' -53.3 NC_005882.1 + 29959 0.67 0.624228
Target:  5'- --gCGGCGGCGGCUaccaaaccgaagUCGaGCuGaAGCg -3'
miRNA:   3'- gaaGCCGCCGUCGA------------AGUaCGuCaUCG- -5'
27590 3' -53.3 NC_005882.1 + 26144 0.67 0.624228
Target:  5'- -gUCGGCcGCgaaGGCg-CcgGCAGUGGCg -3'
miRNA:   3'- gaAGCCGcCG---UCGaaGuaCGUCAUCG- -5'
27590 3' -53.3 NC_005882.1 + 5941 0.67 0.612622
Target:  5'- -aUCGGCuacCGGCUUCAgGUAGUacAGCa -3'
miRNA:   3'- gaAGCCGcc-GUCGAAGUaCGUCA--UCG- -5'
27590 3' -53.3 NC_005882.1 + 23897 0.68 0.57796
Target:  5'- --gCGGUGGCGGCacCGUGUAcuuGUAGUu -3'
miRNA:   3'- gaaGCCGCCGUCGaaGUACGU---CAUCG- -5'
27590 3' -53.3 NC_005882.1 + 7536 0.68 0.543743
Target:  5'- uCUUUGGCGGUuGCUgcgacuUCGUGCucGgcGCa -3'
miRNA:   3'- -GAAGCCGCCGuCGA------AGUACGu-CauCG- -5'
27590 3' -53.3 NC_005882.1 + 12540 0.68 0.53248
Target:  5'- --gCGGCGGCGGCcggCGcUGCGGcgaucGGCg -3'
miRNA:   3'- gaaGCCGCCGUCGaa-GU-ACGUCa----UCG- -5'
27590 3' -53.3 NC_005882.1 + 10267 0.7 0.446013
Target:  5'- aUUCGGCGGCuGCcagUAUGCGGg--- -3'
miRNA:   3'- gAAGCCGCCGuCGaa-GUACGUCaucg -5'
27590 3' -53.3 NC_005882.1 + 29917 0.7 0.43575
Target:  5'- --cCGGCGGcCAGCUUCGUGUcGccccGCa -3'
miRNA:   3'- gaaGCCGCC-GUCGAAGUACGuCau--CG- -5'
27590 3' -53.3 NC_005882.1 + 26339 0.7 0.415642
Target:  5'- gCUUCGcGCGGCGacGCgUUCAUgaaGCAGUGGa -3'
miRNA:   3'- -GAAGC-CGCCGU--CG-AAGUA---CGUCAUCg -5'
27590 3' -53.3 NC_005882.1 + 20557 0.73 0.292001
Target:  5'- gUUCGGcCGGCGGCcgaucUUCGUGCGGaucGCu -3'
miRNA:   3'- gAAGCC-GCCGUCG-----AAGUACGUCau-CG- -5'
27590 3' -53.3 NC_005882.1 + 2249 0.74 0.26956
Target:  5'- -cUUGGaUGGCAcGCUggAUGCGGUAGCg -3'
miRNA:   3'- gaAGCC-GCCGU-CGAagUACGUCAUCG- -5'
27590 3' -53.3 NC_005882.1 + 10109 0.77 0.167772
Target:  5'- aUUgGGCGGC-GCUUgGUGCGGUGGa -3'
miRNA:   3'- gAAgCCGCCGuCGAAgUACGUCAUCg -5'
27590 3' -53.3 NC_005882.1 + 17354 1.11 0.000587
Target:  5'- uCUUCGGCGGCAGCUUCAUGCAGUAGCc -3'
miRNA:   3'- -GAAGCCGCCGUCGAAGUACGUCAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.