miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27592 3' -54 NC_005882.1 + 27594 0.66 0.699146
Target:  5'- cGGCAUGGCGAcgcaggcCGCGGC-CGcGGCg -3'
miRNA:   3'- -CUGUGCUGCUaaa----GCGCCGcGCaCUG- -5'
27592 3' -54 NC_005882.1 + 2845 0.66 0.686799
Target:  5'- gGACGCGGUGAUUcggauauucgaccUgGCGGCGCGaaGCa -3'
miRNA:   3'- -CUGUGCUGCUAA-------------AgCGCCGCGCacUG- -5'
27592 3' -54 NC_005882.1 + 12295 0.66 0.686799
Target:  5'- --aACGGCGGccugggcugggucUaUCGCGaucaGCGCGUGACg -3'
miRNA:   3'- cugUGCUGCU-------------AaAGCGC----CGCGCACUG- -5'
27592 3' -54 NC_005882.1 + 7850 0.66 0.676647
Target:  5'- uGAgGCGAUGGggUUCGCGGaGCGUa-- -3'
miRNA:   3'- -CUgUGCUGCUa-AAGCGCCgCGCAcug -5'
27592 3' -54 NC_005882.1 + 31958 0.66 0.676647
Target:  5'- uGAC-CGACGAgcgUCgGCGGcCGC-UGACc -3'
miRNA:   3'- -CUGuGCUGCUaa-AG-CGCC-GCGcACUG- -5'
27592 3' -54 NC_005882.1 + 21669 0.66 0.665323
Target:  5'- cGACACGGugucCGGgagCGCGGCGCcuuccgGUcGACg -3'
miRNA:   3'- -CUGUGCU----GCUaaaGCGCCGCG------CA-CUG- -5'
27592 3' -54 NC_005882.1 + 20519 0.66 0.665323
Target:  5'- aACACGAUGGUgau-CGGUGCGUcGGCc -3'
miRNA:   3'- cUGUGCUGCUAaagcGCCGCGCA-CUG- -5'
27592 3' -54 NC_005882.1 + 24982 0.67 0.639172
Target:  5'- cGACGCcGCGGagcgggaaaucaaGCGGCGCGUcGACg -3'
miRNA:   3'- -CUGUGcUGCUaaag---------CGCCGCGCA-CUG- -5'
27592 3' -54 NC_005882.1 + 12523 0.67 0.631199
Target:  5'- cGCGCGGCcagugugUCGCGGCgGCGgccGGCg -3'
miRNA:   3'- cUGUGCUGcuaa---AGCGCCG-CGCa--CUG- -5'
27592 3' -54 NC_005882.1 + 26631 0.67 0.617535
Target:  5'- cACGCGACGGUcgccagcuccgCGCGGCGCa---- -3'
miRNA:   3'- cUGUGCUGCUAaa---------GCGCCGCGcacug -5'
27592 3' -54 NC_005882.1 + 32210 0.67 0.608435
Target:  5'- uGCACGGCGcgacugaGCuGGCGCGgGACg -3'
miRNA:   3'- cUGUGCUGCuaaag--CG-CCGCGCaCUG- -5'
27592 3' -54 NC_005882.1 + 29780 0.67 0.608435
Target:  5'- aGGCAacgcugcaGACGAaggcacgCGCGGCGCuUGACc -3'
miRNA:   3'- -CUGUg-------CUGCUaaa----GCGCCGCGcACUG- -5'
27592 3' -54 NC_005882.1 + 31092 0.67 0.608435
Target:  5'- uGACACGcACGAccUCGCaGCGCGgcucccaccGGCg -3'
miRNA:   3'- -CUGUGC-UGCUaaAGCGcCGCGCa--------CUG- -5'
27592 3' -54 NC_005882.1 + 30304 0.68 0.574477
Target:  5'- cGAUaACGGCGAacaggUCGCGGUGCuccugGACa -3'
miRNA:   3'- -CUG-UGCUGCUaa---AGCGCCGCGca---CUG- -5'
27592 3' -54 NC_005882.1 + 25723 0.68 0.563247
Target:  5'- cGAacaGCGcCGAUUacgggCGCGGC-CGUGGCa -3'
miRNA:   3'- -CUg--UGCuGCUAAa----GCGCCGcGCACUG- -5'
27592 3' -54 NC_005882.1 + 8929 0.69 0.519003
Target:  5'- --gACGGCGAUUUCGUG-CGCcUGGCc -3'
miRNA:   3'- cugUGCUGCUAAAGCGCcGCGcACUG- -5'
27592 3' -54 NC_005882.1 + 30632 0.69 0.486741
Target:  5'- --gGCGGCGAUggCGCuGCGC-UGACg -3'
miRNA:   3'- cugUGCUGCUAaaGCGcCGCGcACUG- -5'
27592 3' -54 NC_005882.1 + 6284 0.7 0.45546
Target:  5'- cGACACGGCG--UUUGCGuuGCGUGGu -3'
miRNA:   3'- -CUGUGCUGCuaAAGCGCcgCGCACUg -5'
27592 3' -54 NC_005882.1 + 6219 0.71 0.377779
Target:  5'- uGACGCGGCGGagaUUUUGCG-CGCGaaUGGCa -3'
miRNA:   3'- -CUGUGCUGCU---AAAGCGCcGCGC--ACUG- -5'
27592 3' -54 NC_005882.1 + 13527 0.71 0.377779
Target:  5'- aGCGCaGCGA-UUCGCGGCGCaccuUGGCg -3'
miRNA:   3'- cUGUGcUGCUaAAGCGCCGCGc---ACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.