miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27592 5' -58.3 NC_005882.1 + 19629 0.66 0.470066
Target:  5'- -gGCGGu-CGUcCGCcGCCUUGCGCu- -3'
miRNA:   3'- caCGCCuuGCA-GCGcUGGAGCGCGuc -5'
27592 5' -58.3 NC_005882.1 + 18732 0.66 0.470066
Target:  5'- cUGUGGcuauCGUUGCGcGCCUCGgGUGGu -3'
miRNA:   3'- cACGCCuu--GCAGCGC-UGGAGCgCGUC- -5'
27592 5' -58.3 NC_005882.1 + 10886 0.66 0.470066
Target:  5'- -cGUGGGuuCGUCGCaGCg-CGCGCGGg -3'
miRNA:   3'- caCGCCUu-GCAGCGcUGgaGCGCGUC- -5'
27592 5' -58.3 NC_005882.1 + 4869 0.66 0.46
Target:  5'- -aGCGaGAGCGgCGCGAgUUcgaCGCGCGGc -3'
miRNA:   3'- caCGC-CUUGCaGCGCUgGA---GCGCGUC- -5'
27592 5' -58.3 NC_005882.1 + 21480 0.66 0.44022
Target:  5'- -gGCGGAGgaaauCGUCGaCGcGCaCUUGCGCGGc -3'
miRNA:   3'- caCGCCUU-----GCAGC-GC-UG-GAGCGCGUC- -5'
27592 5' -58.3 NC_005882.1 + 1672 0.66 0.430512
Target:  5'- -gGCGGGAuucCGUCcgguacggGCGGCC-CGCGCGc -3'
miRNA:   3'- caCGCCUU---GCAG--------CGCUGGaGCGCGUc -5'
27592 5' -58.3 NC_005882.1 + 14777 0.67 0.414303
Target:  5'- -cGUGGAACGcugccucgucgaugaUcaCGCGGCCUugcuugcCGCGCAGg -3'
miRNA:   3'- caCGCCUUGC---------------A--GCGCUGGA-------GCGCGUC- -5'
27592 5' -58.3 NC_005882.1 + 5162 0.68 0.349159
Target:  5'- -aGCGGAACGacgaaguacgucUCGCGcccguCCUCGC-CAGu -3'
miRNA:   3'- caCGCCUUGC------------AGCGCu----GGAGCGcGUC- -5'
27592 5' -58.3 NC_005882.1 + 12890 0.68 0.349159
Target:  5'- cGUGUGGAACGcCGCcGCCg-GCGCc- -3'
miRNA:   3'- -CACGCCUUGCaGCGcUGGagCGCGuc -5'
27592 5' -58.3 NC_005882.1 + 7869 0.68 0.348319
Target:  5'- -cGCGGuAUGUCGCGACgCUUGaggcgaugggguuCGCGGa -3'
miRNA:   3'- caCGCCuUGCAGCGCUG-GAGC-------------GCGUC- -5'
27592 5' -58.3 NC_005882.1 + 16061 0.68 0.346643
Target:  5'- -gGCGGcgcacgcacccgccGACGUgCGCGuCCgCGCGCAGc -3'
miRNA:   3'- caCGCC--------------UUGCA-GCGCuGGaGCGCGUC- -5'
27592 5' -58.3 NC_005882.1 + 23264 0.68 0.340823
Target:  5'- cUGCGcGAGCGUCGUG-CCgaUCgGCGCAu -3'
miRNA:   3'- cACGC-CUUGCAGCGCuGG--AG-CGCGUc -5'
27592 5' -58.3 NC_005882.1 + 14196 0.69 0.279371
Target:  5'- -cGCGGGccaGCGUCGCGAuguuCUUCGCGg-- -3'
miRNA:   3'- caCGCCU---UGCAGCGCU----GGAGCGCguc -5'
27592 5' -58.3 NC_005882.1 + 31059 0.71 0.227065
Target:  5'- -gGCGGAucGCGUCGacCGA-CUCGCGCAc -3'
miRNA:   3'- caCGCCU--UGCAGC--GCUgGAGCGCGUc -5'
27592 5' -58.3 NC_005882.1 + 21355 0.71 0.204164
Target:  5'- aUGCGGAugACGUCGcCGGCCgccgUCGcCGCAu -3'
miRNA:   3'- cACGCCU--UGCAGC-GCUGG----AGC-GCGUc -5'
27592 5' -58.3 NC_005882.1 + 27651 0.72 0.198761
Target:  5'- -cGCGGccuGCGUCgccaugccgGCGGCCgcgCGCGCGGc -3'
miRNA:   3'- caCGCCu--UGCAG---------CGCUGGa--GCGCGUC- -5'
27592 5' -58.3 NC_005882.1 + 3861 0.72 0.178379
Target:  5'- gGUGCuuGAGCGUCGCGAUCggcaGCGCGu -3'
miRNA:   3'- -CACGc-CUUGCAGCGCUGGag--CGCGUc -5'
27592 5' -58.3 NC_005882.1 + 6539 0.73 0.159434
Target:  5'- uUGCGGGACGUCgucuccguccgcaGCGGCCUUGaCGCc- -3'
miRNA:   3'- cACGCCUUGCAG-------------CGCUGGAGC-GCGuc -5'
27592 5' -58.3 NC_005882.1 + 25773 0.74 0.124437
Target:  5'- uUGCGGuaa-UCGCGAUgUCGCGCAGg -3'
miRNA:   3'- cACGCCuugcAGCGCUGgAGCGCGUC- -5'
27592 5' -58.3 NC_005882.1 + 26572 0.75 0.111148
Target:  5'- -cGCGGAGC-UgGCGACCgUCGCGUGGg -3'
miRNA:   3'- caCGCCUUGcAgCGCUGG-AGCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.