miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27593 3' -61.3 NC_005882.1 + 25041 0.66 0.315832
Target:  5'- aGGCg--GCCcGgCGCC-CGaGCCGGCCg -3'
miRNA:   3'- -CUGuuaCGGaCgGUGGcGC-CGGCCGG- -5'
27593 3' -61.3 NC_005882.1 + 11920 0.66 0.308173
Target:  5'- cGCGuUGCUcggcGCCGCCGCGcCCguGGCCg -3'
miRNA:   3'- cUGUuACGGa---CGGUGGCGCcGG--CCGG- -5'
27593 3' -61.3 NC_005882.1 + 32745 0.66 0.308173
Target:  5'- cGACGuUGgCUGCguUCGC-GCCGGCUc -3'
miRNA:   3'- -CUGUuACgGACGguGGCGcCGGCCGG- -5'
27593 3' -61.3 NC_005882.1 + 18093 0.66 0.308173
Target:  5'- aGACAGgucaGgCUGCCacGCCGCGGCaccggGGUUg -3'
miRNA:   3'- -CUGUUa---CgGACGG--UGGCGCCGg----CCGG- -5'
27593 3' -61.3 NC_005882.1 + 8869 0.66 0.308173
Target:  5'- aGGCAAUGCgaGCgCuuuuGCCG-GGUCGGCg -3'
miRNA:   3'- -CUGUUACGgaCG-G----UGGCgCCGGCCGg -5'
27593 3' -61.3 NC_005882.1 + 23340 0.66 0.293283
Target:  5'- -----cGCCUggaGCCGCUcucaucgcguGCGGCgGGCCu -3'
miRNA:   3'- cuguuaCGGA---CGGUGG----------CGCCGgCCGG- -5'
27593 3' -61.3 NC_005882.1 + 13784 0.66 0.293283
Target:  5'- uGCAAcGCCUGCCgaagGCCGUGcGCgaaUGGCUc -3'
miRNA:   3'- cUGUUaCGGACGG----UGGCGC-CG---GCCGG- -5'
27593 3' -61.3 NC_005882.1 + 28585 0.66 0.293283
Target:  5'- --gGAUGCCgGCCGCCucgggaaucUGGUCGGUCa -3'
miRNA:   3'- cugUUACGGaCGGUGGc--------GCCGGCCGG- -5'
27593 3' -61.3 NC_005882.1 + 21252 0.66 0.293283
Target:  5'- cGGC-AUGCUcGUCgACCgGUGcGCCGGCCa -3'
miRNA:   3'- -CUGuUACGGaCGG-UGG-CGC-CGGCCGG- -5'
27593 3' -61.3 NC_005882.1 + 20425 0.66 0.293283
Target:  5'- cGCGA--CCgagaaGuUCACCGCGGCCGGCa -3'
miRNA:   3'- cUGUUacGGa----C-GGUGGCGCCGGCCGg -5'
27593 3' -61.3 NC_005882.1 + 21348 0.66 0.292553
Target:  5'- uGACGucGCCgGCCGCCGUcGCCGcaucgagcgcguaGCCg -3'
miRNA:   3'- -CUGUuaCGGaCGGUGGCGcCGGC-------------CGG- -5'
27593 3' -61.3 NC_005882.1 + 31541 0.66 0.286051
Target:  5'- aGACAGcGCC-GUCGCucgucucgacaCGCGuGCCGGCUg -3'
miRNA:   3'- -CUGUUaCGGaCGGUG-----------GCGC-CGGCCGG- -5'
27593 3' -61.3 NC_005882.1 + 26949 0.66 0.286051
Target:  5'- gGGCGcgGCCgGCaaguUCGCGGCCGugaucgggcguGCCg -3'
miRNA:   3'- -CUGUuaCGGaCGgu--GGCGCCGGC-----------CGG- -5'
27593 3' -61.3 NC_005882.1 + 6007 0.66 0.27896
Target:  5'- uGCAG-GCUUGCCaguucagucACUGgGGCCGGUg -3'
miRNA:   3'- cUGUUaCGGACGG---------UGGCgCCGGCCGg -5'
27593 3' -61.3 NC_005882.1 + 211 0.67 0.27201
Target:  5'- cGCGAgccuUGCCUucgGCCugaCGCGGCCcucgcgGGCCu -3'
miRNA:   3'- cUGUU----ACGGA---CGGug-GCGCCGG------CCGG- -5'
27593 3' -61.3 NC_005882.1 + 14244 0.67 0.27201
Target:  5'- aGCAGcgGCCUGuCCGaugaCGCGGCCGacGCg -3'
miRNA:   3'- cUGUUa-CGGAC-GGUg---GCGCCGGC--CGg -5'
27593 3' -61.3 NC_005882.1 + 31927 0.67 0.270637
Target:  5'- gGACGcUGCCUGgcugaaCGCCGUugacggaaaccaGCCGGCCg -3'
miRNA:   3'- -CUGUuACGGACg-----GUGGCGc-----------CGGCCGG- -5'
27593 3' -61.3 NC_005882.1 + 22002 0.67 0.2652
Target:  5'- cGAUcGUGCUgcGCCagcucaacgGCCGCGGCgGuGCCa -3'
miRNA:   3'- -CUGuUACGGa-CGG---------UGGCGCCGgC-CGG- -5'
27593 3' -61.3 NC_005882.1 + 28713 0.67 0.2652
Target:  5'- cGCGcUGCUcGCCGucgagagcuggcCCGCGGCCcGGUCg -3'
miRNA:   3'- cUGUuACGGaCGGU------------GGCGCCGG-CCGG- -5'
27593 3' -61.3 NC_005882.1 + 21517 0.67 0.2652
Target:  5'- uACAA--CCUGCCGCUGUcGCCGGUUc -3'
miRNA:   3'- cUGUUacGGACGGUGGCGcCGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.