Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27594 | 3' | -56.9 | NC_005882.1 | + | 17415 | 0.66 | 0.505819 |
|
Target: 5'- aGGUCAcgcGCCUGgacaUCCUGCAGGAc -3' miRNA: 3'- -CCGGUaaaCGGGCgac-AGGACGUCCU- -5' |
|||||||
| 27594 | 3' | -56.9 | NC_005882.1 | + | 23540 | 0.66 | 0.49516 |
|
Target: 5'- cGGCuCGg--GCCUGCg--CCUGUGGGGc -3' miRNA: 3'- -CCG-GUaaaCGGGCGacaGGACGUCCU- -5' |
|||||||
| 27594 | 3' | -56.9 | NC_005882.1 | + | 17713 | 0.66 | 0.483555 |
|
Target: 5'- cGCCAUUUgcucggcguagcgGCCCGCcaUGUaggccgUCUGCAGGu -3' miRNA: 3'- cCGGUAAA-------------CGGGCG--ACA------GGACGUCCu -5' |
|||||||
| 27594 | 3' | -56.9 | NC_005882.1 | + | 14328 | 0.66 | 0.463826 |
|
Target: 5'- cGGaUCGUgcGCCCGCcGUCCUGCu--- -3' miRNA: 3'- -CC-GGUAaaCGGGCGaCAGGACGuccu -5' |
|||||||
| 27594 | 3' | -56.9 | NC_005882.1 | + | 25660 | 0.66 | 0.463826 |
|
Target: 5'- cGGCCGc--GCCCguaaucggcGCUGUUCgGCAGGc -3' miRNA: 3'- -CCGGUaaaCGGG---------CGACAGGaCGUCCu -5' |
|||||||
| 27594 | 3' | -56.9 | NC_005882.1 | + | 24085 | 0.67 | 0.43356 |
|
Target: 5'- cGGCCAUgaucGCCUGgaUGUCCgGCAGc- -3' miRNA: 3'- -CCGGUAaa--CGGGCg-ACAGGaCGUCcu -5' |
|||||||
| 27594 | 3' | -56.9 | NC_005882.1 | + | 18361 | 0.68 | 0.350146 |
|
Target: 5'- aGGCCg---GUCUGaUGaUCCUGCAGGAc -3' miRNA: 3'- -CCGGuaaaCGGGCgAC-AGGACGUCCU- -5' |
|||||||
| 27594 | 3' | -56.9 | NC_005882.1 | + | 17503 | 0.69 | 0.341611 |
|
Target: 5'- uGCgGUUUcGaCCGCguugcgaaUGUCCUGCAGGAu -3' miRNA: 3'- cCGgUAAA-CgGGCG--------ACAGGACGUCCU- -5' |
|||||||
| 27594 | 3' | -56.9 | NC_005882.1 | + | 18438 | 1.11 | 0.000253 |
|
Target: 5'- cGGCCAUUUGCCCGCUGUCCUGCAGGAu -3' miRNA: 3'- -CCGGUAAACGGGCGACAGGACGUCCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home