miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27594 5' -61.7 NC_005882.1 + 22969 0.67 0.278694
Target:  5'- cGGCCaagGCGAccuacgacuaCGCGGacccgacgaagguCaCGGCCGCGGa -3'
miRNA:   3'- -CCGGaa-CGCU----------GCGCU-------------GcGCCGGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 19616 0.67 0.272587
Target:  5'- cGCCUUGCGcucACGCGccuGCGCGuCgGCGa -3'
miRNA:   3'- cCGGAACGC---UGCGC---UGCGCcGgCGCc -5'
27594 5' -61.7 NC_005882.1 + 9486 0.67 0.272587
Target:  5'- aGCCgcUGCGauugGCGCGcugGCGGCCGCa- -3'
miRNA:   3'- cCGGa-ACGC----UGCGCug-CGCCGGCGcc -5'
27594 5' -61.7 NC_005882.1 + 11897 0.67 0.265929
Target:  5'- cGCCgagGaCGaucaccGCGCGGCGaagcauGGCCGCGGc -3'
miRNA:   3'- cCGGaa-C-GC------UGCGCUGCg-----CCGGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 33041 0.67 0.265929
Target:  5'- cGCCUucagGUaGCGCG-UGCGGCCGCc- -3'
miRNA:   3'- cCGGAa---CGcUGCGCuGCGCCGGCGcc -5'
27594 5' -61.7 NC_005882.1 + 14748 0.68 0.261997
Target:  5'- cGGCCUugcuUGCcgcgcagguuggacgGGCGCGACGacaGuGCCGUGa -3'
miRNA:   3'- -CCGGA----ACG---------------CUGCGCUGCg--C-CGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 14249 0.68 0.259402
Target:  5'- cGGCCUgucCGA--UGACGCGGCCGaCGc -3'
miRNA:   3'- -CCGGAac-GCUgcGCUGCGCCGGC-GCc -5'
27594 5' -61.7 NC_005882.1 + 30621 0.68 0.259402
Target:  5'- uGGCCggaucggGCGGCGaUGGCGCuGcGCUGaCGGg -3'
miRNA:   3'- -CCGGaa-----CGCUGC-GCUGCG-C-CGGC-GCC- -5'
27594 5' -61.7 NC_005882.1 + 21994 0.68 0.259402
Target:  5'- uGCCgucGCGAuCGUGcuGCGCcagcucaacGGCCGCGGc -3'
miRNA:   3'- cCGGaa-CGCU-GCGC--UGCG---------CCGGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 21582 0.68 0.246742
Target:  5'- cGUCggaaccgGCGACaGCGGCagguuguaGCGGCCGCGc -3'
miRNA:   3'- cCGGaa-----CGCUG-CGCUG--------CGCCGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 29846 0.68 0.234598
Target:  5'- cGGUCgagaUGCGGgGCGACacgaaGCuGGCCGCcGGu -3'
miRNA:   3'- -CCGGa---ACGCUgCGCUG-----CG-CCGGCG-CC- -5'
27594 5' -61.7 NC_005882.1 + 8924 0.68 0.234598
Target:  5'- aGCUUgacgGCGAuuuCGUG-CGCcuGGCCGCGGa -3'
miRNA:   3'- cCGGAa---CGCU---GCGCuGCG--CCGGCGCC- -5'
27594 5' -61.7 NC_005882.1 + 12466 0.68 0.234598
Target:  5'- aGCC--GCGGuucuCGCGGaaaGCGGCCGCGu -3'
miRNA:   3'- cCGGaaCGCU----GCGCUg--CGCCGGCGCc -5'
27594 5' -61.7 NC_005882.1 + 8206 0.68 0.234598
Target:  5'- cGGCC--GCGACGCGA--CGGCCGaaGa -3'
miRNA:   3'- -CCGGaaCGCUGCGCUgcGCCGGCgcC- -5'
27594 5' -61.7 NC_005882.1 + 21475 0.68 0.234005
Target:  5'- cGCCagGCggaggaaaucgucGACGCGcacuuGCGCGGCCGCu- -3'
miRNA:   3'- cCGGaaCG-------------CUGCGC-----UGCGCCGGCGcc -5'
27594 5' -61.7 NC_005882.1 + 28349 0.68 0.232821
Target:  5'- gGGCCaaccaggcgcaguccGCGAUGCG-CGUGGCCGuCGa -3'
miRNA:   3'- -CCGGaa-------------CGCUGCGCuGCGCCGGC-GCc -5'
27594 5' -61.7 NC_005882.1 + 6462 0.68 0.228717
Target:  5'- cGCCcagGCaGCGCG-CGCGGCCGgccaCGGc -3'
miRNA:   3'- cCGGaa-CGcUGCGCuGCGCCGGC----GCC- -5'
27594 5' -61.7 NC_005882.1 + 3945 0.68 0.228717
Target:  5'- gGGCCUUGUGgagcuGCGCGAaGCGGgCuucCGGg -3'
miRNA:   3'- -CCGGAACGC-----UGCGCUgCGCCgGc--GCC- -5'
27594 5' -61.7 NC_005882.1 + 25446 0.69 0.22296
Target:  5'- cGCCUggGgGACGCGaugGCGCGgGCCGUu- -3'
miRNA:   3'- cCGGAa-CgCUGCGC---UGCGC-CGGCGcc -5'
27594 5' -61.7 NC_005882.1 + 29186 0.69 0.22296
Target:  5'- cGCCgUUGCu-CGCG-UGCGGCCGCu- -3'
miRNA:   3'- cCGG-AACGcuGCGCuGCGCCGGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.