Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27595 | 3' | -55.2 | NC_005882.1 | + | 15520 | 0.72 | 0.273497 |
Target: 5'- -cGCGAgCACAUGC-CGCccGUgaaGGCGGCg -3' miRNA: 3'- uaUGCU-GUGUACGaGCGa-CA---CCGCCG- -5' |
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27595 | 3' | -55.2 | NC_005882.1 | + | 7696 | 0.66 | 0.568078 |
Target: 5'- --uCGAgGC--GCUCGCg--GGCGGCg -3' miRNA: 3'- uauGCUgUGuaCGAGCGacaCCGCCG- -5' |
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27595 | 3' | -55.2 | NC_005882.1 | + | 5384 | 0.67 | 0.534472 |
Target: 5'- -gACGGCGCcuugAUGagUUGCUG-GGCGGUa -3' miRNA: 3'- uaUGCUGUG----UACg-AGCGACaCCGCCG- -5' |
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27595 | 3' | -55.2 | NC_005882.1 | + | 29180 | 0.67 | 0.512462 |
Target: 5'- --cCGGCGCGccguUGCUCGC-GU-GCGGCc -3' miRNA: 3'- uauGCUGUGU----ACGAGCGaCAcCGCCG- -5' |
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27595 | 3' | -55.2 | NC_005882.1 | + | 17807 | 0.67 | 0.512462 |
Target: 5'- -aACGGCugGggcugccggUGC-CGC-GUGGUGGCg -3' miRNA: 3'- uaUGCUGugU---------ACGaGCGaCACCGCCG- -5' |
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27595 | 3' | -55.2 | NC_005882.1 | + | 6643 | 0.67 | 0.505931 |
Target: 5'- cGUGCGGCgcgccgugcgucucgGCGUGCUgCGCcaagGUuucgaaGGCGGCa -3' miRNA: 3'- -UAUGCUG---------------UGUACGA-GCGa---CA------CCGCCG- -5' |
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27595 | 3' | -55.2 | NC_005882.1 | + | 18284 | 0.67 | 0.501597 |
Target: 5'- -gACGAuuCACAUGCgCGUc--GGCGGCa -3' miRNA: 3'- uaUGCU--GUGUACGaGCGacaCCGCCG- -5' |
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27595 | 3' | -55.2 | NC_005882.1 | + | 22368 | 0.67 | 0.490834 |
Target: 5'- -aGCGACGC-UGCUCGCgaugGGCuaccugaagccGGCc -3' miRNA: 3'- uaUGCUGUGuACGAGCGaca-CCG-----------CCG- -5' |
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27595 | 3' | -55.2 | NC_005882.1 | + | 27600 | 0.68 | 0.469639 |
Target: 5'- -gGCGACGCAgGC-CGCgGccGCGGCg -3' miRNA: 3'- uaUGCUGUGUaCGaGCGaCacCGCCG- -5' |
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27595 | 3' | -55.2 | NC_005882.1 | + | 8589 | 0.7 | 0.362467 |
Target: 5'- -aGCGGCACGUGUggaCGCUGUcG-GGCa -3' miRNA: 3'- uaUGCUGUGUACGa--GCGACAcCgCCG- -5' |
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27595 | 3' | -55.2 | NC_005882.1 | + | 12260 | 0.69 | 0.371486 |
Target: 5'- cAUGCGAgCGCAUgGCgaugaCGCUGUcggccuauaacGGCGGCc -3' miRNA: 3'- -UAUGCU-GUGUA-CGa----GCGACA-----------CCGCCG- -5' |
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27595 | 3' | -55.2 | NC_005882.1 | + | 34560 | 0.69 | 0.408095 |
Target: 5'- uUACGGCAgAUGagaUCGUUGUcgagacggcgcucGGCGGUg -3' miRNA: 3'- uAUGCUGUgUACg--AGCGACA-------------CCGCCG- -5' |
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27595 | 3' | -55.2 | NC_005882.1 | + | 29331 | 0.69 | 0.409063 |
Target: 5'- -gGCGACGaucgcgGCUCGC-GUGGCGaaGCg -3' miRNA: 3'- uaUGCUGUgua---CGAGCGaCACCGC--CG- -5' |
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27595 | 3' | -55.2 | NC_005882.1 | + | 24409 | 0.68 | 0.432717 |
Target: 5'- -gGCGGCgaagACAUGCUgGCUGacuuccgcgccaacaUcGGCGGCu -3' miRNA: 3'- uaUGCUG----UGUACGAgCGAC---------------A-CCGCCG- -5' |
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27595 | 3' | -55.2 | NC_005882.1 | + | 7199 | 0.68 | 0.469639 |
Target: 5'- cUACGACGCAUGUUCGCcgcaaUGUcGCGu- -3' miRNA: 3'- uAUGCUGUGUACGAGCG-----ACAcCGCcg -5' |
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27595 | 3' | -55.2 | NC_005882.1 | + | 27895 | 0.66 | 0.590777 |
Target: 5'- uUGCGaACACGUcaGCUC-CUGUacGcGCGGCg -3' miRNA: 3'- uAUGC-UGUGUA--CGAGcGACA--C-CGCCG- -5' |
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27595 | 3' | -55.2 | NC_005882.1 | + | 14011 | 0.72 | 0.259335 |
Target: 5'- cGUGCGGCuucCGUGCUCGCcuUGaucGCGGCg -3' miRNA: 3'- -UAUGCUGu--GUACGAGCG--ACac-CGCCG- -5' |
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27595 | 3' | -55.2 | NC_005882.1 | + | 23915 | 0.69 | 0.371486 |
Target: 5'- cGUACGuCAgGcGUUCGagcgGUGGCGGCa -3' miRNA: 3'- -UAUGCuGUgUaCGAGCga--CACCGCCG- -5' |
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27595 | 3' | -55.2 | NC_005882.1 | + | 8283 | 0.69 | 0.409063 |
Target: 5'- -gAgGACGCGUGCggugccgauuUCGUcacucgcuggGUGGCGGCa -3' miRNA: 3'- uaUgCUGUGUACG----------AGCGa---------CACCGCCG- -5' |
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27595 | 3' | -55.2 | NC_005882.1 | + | 19854 | 0.68 | 0.428719 |
Target: 5'- --cCGGCGC--GCUCGCgcGUGGCGuGCu -3' miRNA: 3'- uauGCUGUGuaCGAGCGa-CACCGC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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