miRNA display CGI


Results 41 - 55 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27595 5' -61.1 NC_005882.1 + 19760 0.67 0.263033
Target:  5'- aUCGCCUUcGCcgaacucgaacgGCUCACGUGCCgugaagucgagaaaUGCGaCGa -3'
miRNA:   3'- -GGCGGAA-CG------------CGAGUGCGCGG--------------ACGC-GC- -5'
27595 5' -61.1 NC_005882.1 + 19798 0.74 0.087551
Target:  5'- aCGCCacGCGCgaGCGCGCCgGCGUGa -3'
miRNA:   3'- gGCGGaaCGCGagUGCGCGGaCGCGC- -5'
27595 5' -61.1 NC_005882.1 + 19857 0.76 0.062237
Target:  5'- aCGCCggcGCGCUCGCGCGUg-GCGUGc -3'
miRNA:   3'- gGCGGaa-CGCGAGUGCGCGgaCGCGC- -5'
27595 5' -61.1 NC_005882.1 + 21157 0.74 0.09263
Target:  5'- aCGCCgaGCGCcuUCGCGcCGgCUGCGCa -3'
miRNA:   3'- gGCGGaaCGCG--AGUGC-GCgGACGCGc -5'
27595 5' -61.1 NC_005882.1 + 23084 0.66 0.330888
Target:  5'- uCCGgC-UGCGUUCACgGCGCCgaugaugucCGCGg -3'
miRNA:   3'- -GGCgGaACGCGAGUG-CGCGGac-------GCGC- -5'
27595 5' -61.1 NC_005882.1 + 23202 0.67 0.278691
Target:  5'- gCGCCgaucgGCacgacGCUCGCGCaggcgcugGCCggGCGCGg -3'
miRNA:   3'- gGCGGaa---CG-----CGAGUGCG--------CGGa-CGCGC- -5'
27595 5' -61.1 NC_005882.1 + 23290 0.78 0.042809
Target:  5'- cCCGCCggcccGCGCcCGgccaGCGCCUGCGCGa -3'
miRNA:   3'- -GGCGGaa---CGCGaGUg---CGCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 25444 0.71 0.148438
Target:  5'- cCCGCCUggggGaCGCgauggCGCGgGCCguUGCGCa -3'
miRNA:   3'- -GGCGGAa---C-GCGa----GUGCgCGG--ACGCGc -5'
27595 5' -61.1 NC_005882.1 + 25573 0.67 0.285728
Target:  5'- cCCGgCUgGCGCgcggCGC-CGCgCUGCGUGa -3'
miRNA:   3'- -GGCgGAaCGCGa---GUGcGCG-GACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 26262 0.73 0.109589
Target:  5'- gUCGCCUUcGCGUUCAUGUGCgacagccagUUGCGCa -3'
miRNA:   3'- -GGCGGAA-CGCGAGUGCGCG---------GACGCGc -5'
27595 5' -61.1 NC_005882.1 + 26613 0.67 0.285728
Target:  5'- uCCGCgcgGCGCacguaguccuggUCGaugguauucaGCGCCUGCGCGc -3'
miRNA:   3'- -GGCGgaaCGCG------------AGUg---------CGCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 28121 0.79 0.034948
Target:  5'- aUCGCCUguuuUGCGCUCAC-CGCC-GCGCGc -3'
miRNA:   3'- -GGCGGA----ACGCGAGUGcGCGGaCGCGC- -5'
27595 5' -61.1 NC_005882.1 + 28346 0.74 0.082739
Target:  5'- aCCGCCgaugUGaCGCUgGagacCGCCUGCGCGg -3'
miRNA:   3'- -GGCGGa---AC-GCGAgUgc--GCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 28635 0.68 0.245571
Target:  5'- gCCGCCUUGCGCcgaUCGgacCGCauCCaGCGCa -3'
miRNA:   3'- -GGCGGAACGCG---AGU---GCGc-GGaCGCGc -5'
27595 5' -61.1 NC_005882.1 + 32142 0.72 0.129425
Target:  5'- -gGCUUcUGCgGCcgUACGUGCCUGCGCGa -3'
miRNA:   3'- ggCGGA-ACG-CGa-GUGCGCGGACGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.