miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27595 5' -61.1 NC_005882.1 + 18982 0.69 0.215784
Target:  5'- uCgGCCauccGCGCgacaACGCGCCgGCGUGg -3'
miRNA:   3'- -GgCGGaa--CGCGag--UGCGCGGaCGCGC- -5'
27595 5' -61.1 NC_005882.1 + 18640 0.72 0.111748
Target:  5'- -aGCCgaucGCGCUCuGCGCGCCUccggaccacccgagGCGCGc -3'
miRNA:   3'- ggCGGaa--CGCGAG-UGCGCGGA--------------CGCGC- -5'
27595 5' -61.1 NC_005882.1 + 18294 0.74 0.083918
Target:  5'- gCCgGCCUUGCGCggcgaaguuguccUCGgugaccagcaccaGCGCCUGCGCGa -3'
miRNA:   3'- -GG-CGGAACGCG-------------AGUg------------CGCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 18130 0.68 0.239352
Target:  5'- aCGaCUcgGCGCUgcgCACGCGCUUGCuGCa -3'
miRNA:   3'- gGC-GGaaCGCGA---GUGCGCGGACG-CGc -5'
27595 5' -61.1 NC_005882.1 + 17176 0.74 0.0802
Target:  5'- uCCGCUUUaaaagcgGCGCgaccaGCGCCUGCGCGu -3'
miRNA:   3'- -GGCGGAA-------CGCGagug-CGCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 16808 0.71 0.147631
Target:  5'- aCCGCCUUGuCGCcgucgcgaugucgUC-CGUcaccucaagcccgGCCUGCGCGg -3'
miRNA:   3'- -GGCGGAAC-GCG-------------AGuGCG-------------CGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 16071 0.76 0.0659
Target:  5'- gCCGCCUUGCgGCggcgCACGCacccGCCgacgUGCGCGu -3'
miRNA:   3'- -GGCGGAACG-CGa---GUGCG----CGG----ACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 15584 0.73 0.103635
Target:  5'- aUGCCgacGUGCUCGCG-GaCCUGCGCGc -3'
miRNA:   3'- gGCGGaa-CGCGAGUGCgC-GGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 14182 0.67 0.271794
Target:  5'- uCCGCCUggagGUGCaggCACGCGCggaaGCGg -3'
miRNA:   3'- -GGCGGAa---CGCGa--GUGCGCGgacgCGC- -5'
27595 5' -61.1 NC_005882.1 + 13660 0.68 0.233266
Target:  5'- gCCGCUggugggGCGauCUCACGCGCUacgGCGuCGa -3'
miRNA:   3'- -GGCGGaa----CGC--GAGUGCGCGGa--CGC-GC- -5'
27595 5' -61.1 NC_005882.1 + 13352 0.66 0.29801
Target:  5'- uCCGCCUgaaaucgcagaaaaUcGCGCUCcagGCGCGCC-GUGUu -3'
miRNA:   3'- -GGCGGA--------------A-CGCGAG---UGCGCGGaCGCGc -5'
27595 5' -61.1 NC_005882.1 + 12769 0.71 0.156308
Target:  5'- gCCGCCgcGCGCUgcgucucCGCGCGUUccuugaUGCGCGc -3'
miRNA:   3'- -GGCGGaaCGCGA-------GUGCGCGG------ACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 12616 0.66 0.315272
Target:  5'- gCCGCCagUGCGCcgaUCGCcgcaGCGCCgGcCGCc -3'
miRNA:   3'- -GGCGGa-ACGCG---AGUG----CGCGGaC-GCGc -5'
27595 5' -61.1 NC_005882.1 + 12384 0.67 0.258411
Target:  5'- gCCGCCg-GCaGCcgUCACGCGCUgauCGCGa -3'
miRNA:   3'- -GGCGGaaCG-CG--AGUGCGCGGac-GCGC- -5'
27595 5' -61.1 NC_005882.1 + 12314 0.69 0.189146
Target:  5'- aUCGCCaUGCGCUCGCaugcaccgGcCGCCgugaUGCGCu -3'
miRNA:   3'- -GGCGGaACGCGAGUG--------C-GCGG----ACGCGc -5'
27595 5' -61.1 NC_005882.1 + 12128 0.67 0.258411
Target:  5'- aCGCUgacgGCGUcCGCGCGCCaGCGg- -3'
miRNA:   3'- gGCGGaa--CGCGaGUGCGCGGaCGCgc -5'
27595 5' -61.1 NC_005882.1 + 12007 0.67 0.258411
Target:  5'- gCGCCUcgGCGggcaCUUGCGCgGCCacggGCGCGg -3'
miRNA:   3'- gGCGGAa-CGC----GAGUGCG-CGGa---CGCGC- -5'
27595 5' -61.1 NC_005882.1 + 11960 0.71 0.144442
Target:  5'- cCCGCCgagGCGCUgGCuaccGCGCCgagcugacGCGCa -3'
miRNA:   3'- -GGCGGaa-CGCGAgUG----CGCGGa-------CGCGc -5'
27595 5' -61.1 NC_005882.1 + 10956 0.75 0.067809
Target:  5'- uCCGCa-UGCGCcCGCGCGCgCUGCGaCGa -3'
miRNA:   3'- -GGCGgaACGCGaGUGCGCG-GACGC-GC- -5'
27595 5' -61.1 NC_005882.1 + 9564 0.66 0.338907
Target:  5'- gCGCgUcGUGCUUGCGgcCGCCaGCGCGc -3'
miRNA:   3'- gGCGgAaCGCGAGUGC--GCGGaCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.