miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27595 5' -61.1 NC_005882.1 + 13352 0.66 0.29801
Target:  5'- uCCGCCUgaaaucgcagaaaaUcGCGCUCcagGCGCGCC-GUGUu -3'
miRNA:   3'- -GGCGGA--------------A-CGCGAG---UGCGCGGaCGCGc -5'
27595 5' -61.1 NC_005882.1 + 9314 0.68 0.245571
Target:  5'- gCCGUCUgGCuauaccccaaccGCUCACGCuCCUcGCGCa -3'
miRNA:   3'- -GGCGGAaCG------------CGAGUGCGcGGA-CGCGc -5'
27595 5' -61.1 NC_005882.1 + 6900 0.68 0.250004
Target:  5'- gCCGCC--GCGCaaACGCGUCUGCuguccgacaagaacGCGa -3'
miRNA:   3'- -GGCGGaaCGCGagUGCGCGGACG--------------CGC- -5'
27595 5' -61.1 NC_005882.1 + 12616 0.66 0.315272
Target:  5'- gCCGCCagUGCGCcgaUCGCcgcaGCGCCgGcCGCc -3'
miRNA:   3'- -GGCGGa-ACGCG---AGUG----CGCGGaC-GCGc -5'
27595 5' -61.1 NC_005882.1 + 9564 0.66 0.338907
Target:  5'- gCGCgUcGUGCUUGCGgcCGCCaGCGCGc -3'
miRNA:   3'- gGCGgAaCGCGAGUGC--GCGGaCGCGC- -5'
27595 5' -61.1 NC_005882.1 + 12384 0.67 0.258411
Target:  5'- gCCGCCg-GCaGCcgUCACGCGCUgauCGCGa -3'
miRNA:   3'- -GGCGGaaCG-CG--AGUGCGCGGac-GCGC- -5'
27595 5' -61.1 NC_005882.1 + 19760 0.67 0.263033
Target:  5'- aUCGCCUUcGCcgaacucgaacgGCUCACGUGCCgugaagucgagaaaUGCGaCGa -3'
miRNA:   3'- -GGCGGAA-CG------------CGAGUGCGCGG--------------ACGC-GC- -5'
27595 5' -61.1 NC_005882.1 + 4946 0.66 0.32301
Target:  5'- aCGaCCUcguUGCGC-CGCGCGUCgaacucGCGCc -3'
miRNA:   3'- gGC-GGA---ACGCGaGUGCGCGGa-----CGCGc -5'
27595 5' -61.1 NC_005882.1 + 28635 0.68 0.245571
Target:  5'- gCCGCCUUGCGCcgaUCGgacCGCauCCaGCGCa -3'
miRNA:   3'- -GGCGGAACGCG---AGU---GCGc-GGaCGCGc -5'
27595 5' -61.1 NC_005882.1 + 12007 0.67 0.258411
Target:  5'- gCGCCUcgGCGggcaCUUGCGCgGCCacggGCGCGg -3'
miRNA:   3'- gGCGGAa-CGC----GAGUGCG-CGGa---CGCGC- -5'
27595 5' -61.1 NC_005882.1 + 12128 0.67 0.258411
Target:  5'- aCGCUgacgGCGUcCGCGCGCCaGCGg- -3'
miRNA:   3'- gGCGGaa--CGCGaGUGCGCGGaCGCgc -5'
27595 5' -61.1 NC_005882.1 + 26613 0.67 0.285728
Target:  5'- uCCGCgcgGCGCacguaguccuggUCGaugguauucaGCGCCUGCGCGc -3'
miRNA:   3'- -GGCGgaaCGCG------------AGUg---------CGCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 3324 0.66 0.32301
Target:  5'- gCCGCgcaGCGCcCGCGCGCaaGCGUu -3'
miRNA:   3'- -GGCGgaaCGCGaGUGCGCGgaCGCGc -5'
27595 5' -61.1 NC_005882.1 + 15584 0.73 0.103635
Target:  5'- aUGCCgacGUGCUCGCG-GaCCUGCGCGc -3'
miRNA:   3'- gGCGGaa-CGCGAGUGCgC-GGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 19297 0.66 0.330888
Target:  5'- aUGCgg-GC-CUCugGCgcaGCCUGCGCGa -3'
miRNA:   3'- gGCGgaaCGcGAGugCG---CGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 627 0.67 0.256451
Target:  5'- uUCGCCUggucgGCGCcgaugucggccagcUCGaucaGUGCCUGgGCGa -3'
miRNA:   3'- -GGCGGAa----CGCG--------------AGUg---CGCGGACgCGC- -5'
27595 5' -61.1 NC_005882.1 + 25444 0.71 0.148438
Target:  5'- cCCGCCUggggGaCGCgauggCGCGgGCCguUGCGCa -3'
miRNA:   3'- -GGCGGAa---C-GCGa----GUGCgCGG--ACGCGc -5'
27595 5' -61.1 NC_005882.1 + 9198 0.67 0.278691
Target:  5'- gCGCCauUUGgGUaaucguauggauUCAauaggcgaGCGCCUGCGCGa -3'
miRNA:   3'- gGCGG--AACgCG------------AGUg-------CGCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 14182 0.67 0.271794
Target:  5'- uCCGCCUggagGUGCaggCACGCGCggaaGCGg -3'
miRNA:   3'- -GGCGGAa---CGCGa--GUGCGCGgacgCGC- -5'
27595 5' -61.1 NC_005882.1 + 7692 0.67 0.265034
Target:  5'- gCUGUCgagGCGCUCGCGgGCg-GCGuCGa -3'
miRNA:   3'- -GGCGGaa-CGCGAGUGCgCGgaCGC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.