miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27595 5' -61.1 NC_005882.1 + 12384 0.67 0.258411
Target:  5'- gCCGCCg-GCaGCcgUCACGCGCUgauCGCGa -3'
miRNA:   3'- -GGCGGaaCG-CG--AGUGCGCGGac-GCGC- -5'
27595 5' -61.1 NC_005882.1 + 12128 0.67 0.258411
Target:  5'- aCGCUgacgGCGUcCGCGCGCCaGCGg- -3'
miRNA:   3'- gGCGGaa--CGCGaGUGCGCGGaCGCgc -5'
27595 5' -61.1 NC_005882.1 + 627 0.67 0.256451
Target:  5'- uUCGCCUggucgGCGCcgaugucggccagcUCGaucaGUGCCUGgGCGa -3'
miRNA:   3'- -GGCGGAa----CGCG--------------AGUg---CGCGGACgCGC- -5'
27595 5' -61.1 NC_005882.1 + 6900 0.68 0.250004
Target:  5'- gCCGCC--GCGCaaACGCGUCUGCuguccgacaagaacGCGa -3'
miRNA:   3'- -GGCGGaaCGCGagUGCGCGGACG--------------CGC- -5'
27595 5' -61.1 NC_005882.1 + 28635 0.68 0.245571
Target:  5'- gCCGCCUUGCGCcgaUCGgacCGCauCCaGCGCa -3'
miRNA:   3'- -GGCGGAACGCG---AGU---GCGc-GGaCGCGc -5'
27595 5' -61.1 NC_005882.1 + 9314 0.68 0.245571
Target:  5'- gCCGUCUgGCuauaccccaaccGCUCACGCuCCUcGCGCa -3'
miRNA:   3'- -GGCGGAaCG------------CGAGUGCGcGGA-CGCGc -5'
27595 5' -61.1 NC_005882.1 + 18130 0.68 0.239352
Target:  5'- aCGaCUcgGCGCUgcgCACGCGCUUGCuGCa -3'
miRNA:   3'- gGC-GGaaCGCGA---GUGCGCGGACG-CGc -5'
27595 5' -61.1 NC_005882.1 + 13660 0.68 0.233266
Target:  5'- gCCGCUggugggGCGauCUCACGCGCUacgGCGuCGa -3'
miRNA:   3'- -GGCGGaa----CGC--GAGUGCGCGGa--CGC-GC- -5'
27595 5' -61.1 NC_005882.1 + 6651 0.68 0.227309
Target:  5'- gCGCCgUGCGuCUCgGCGUGC-UGCGCc -3'
miRNA:   3'- gGCGGaACGC-GAG-UGCGCGgACGCGc -5'
27595 5' -61.1 NC_005882.1 + 5977 0.68 0.221483
Target:  5'- aUGCCcgUGCGa--ACG-GCCUGCGCGu -3'
miRNA:   3'- gGCGGa-ACGCgagUGCgCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 18982 0.69 0.215784
Target:  5'- uCgGCCauccGCGCgacaACGCGCCgGCGUGg -3'
miRNA:   3'- -GgCGGaa--CGCGag--UGCGCGGaCGCGC- -5'
27595 5' -61.1 NC_005882.1 + 19489 0.69 0.199436
Target:  5'- gCCGCCccGCGUUCggcgaAUGCGCUggucgGCGCa -3'
miRNA:   3'- -GGCGGaaCGCGAG-----UGCGCGGa----CGCGc -5'
27595 5' -61.1 NC_005882.1 + 12314 0.69 0.189146
Target:  5'- aUCGCCaUGCGCUCGCaugcaccgGcCGCCgugaUGCGCu -3'
miRNA:   3'- -GGCGGaACGCGAGUG--------C-GCGG----ACGCGc -5'
27595 5' -61.1 NC_005882.1 + 12769 0.71 0.156308
Target:  5'- gCCGCCgcGCGCUgcgucucCGCGCGUUccuugaUGCGCGc -3'
miRNA:   3'- -GGCGGaaCGCGA-------GUGCGCGG------ACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 3409 0.71 0.152534
Target:  5'- gCGUCUcGCGuCUCACGUugcugaacGCUUGCGCGc -3'
miRNA:   3'- gGCGGAaCGC-GAGUGCG--------CGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 25444 0.71 0.148438
Target:  5'- cCCGCCUggggGaCGCgauggCGCGgGCCguUGCGCa -3'
miRNA:   3'- -GGCGGAa---C-GCGa----GUGCgCGG--ACGCGc -5'
27595 5' -61.1 NC_005882.1 + 16808 0.71 0.147631
Target:  5'- aCCGCCUUGuCGCcgucgcgaugucgUC-CGUcaccucaagcccgGCCUGCGCGg -3'
miRNA:   3'- -GGCGGAAC-GCG-------------AGuGCG-------------CGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 11960 0.71 0.144442
Target:  5'- cCCGCCgagGCGCUgGCuaccGCGCCgagcugacGCGCa -3'
miRNA:   3'- -GGCGGaa-CGCGAgUG----CGCGGa-------CGCGc -5'
27595 5' -61.1 NC_005882.1 + 32142 0.72 0.129425
Target:  5'- -gGCUUcUGCgGCcgUACGUGCCUGCGCGa -3'
miRNA:   3'- ggCGGA-ACG-CGa-GUGCGCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 19548 0.72 0.119123
Target:  5'- cUCGCCgacGCGCagGCGCGUgaGCGCa -3'
miRNA:   3'- -GGCGGaa-CGCGagUGCGCGgaCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.