miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27596 3' -60.1 NC_005882.1 + 11993 0.66 0.309191
Target:  5'- -aCUUGCGCGgccacgGGCGcgGCggCGCCGAGc -3'
miRNA:   3'- gcGAGCGCGCa-----CCGCa-CGa-GCGGUUU- -5'
27596 3' -60.1 NC_005882.1 + 9391 0.67 0.301552
Target:  5'- aGCUgGCGUccGGCGaacGCUCGCCu-- -3'
miRNA:   3'- gCGAgCGCGcaCCGCa--CGAGCGGuuu -5'
27596 3' -60.1 NC_005882.1 + 23217 0.67 0.301552
Target:  5'- aCGCUCGCGCa-GGC--GCUgGCCGGg -3'
miRNA:   3'- -GCGAGCGCGcaCCGcaCGAgCGGUUu -5'
27596 3' -60.1 NC_005882.1 + 5651 0.67 0.272453
Target:  5'- aGgUUGCGCGUcauGGacgcCGUGUUCGCCGAu -3'
miRNA:   3'- gCgAGCGCGCA---CC----GCACGAGCGGUUu -5'
27596 3' -60.1 NC_005882.1 + 11934 0.68 0.232477
Target:  5'- cCGC-CGCGCccGUGGCcgcgcaaGUGCcCGCCGAGg -3'
miRNA:   3'- -GCGaGCGCG--CACCG-------CACGaGCGGUUU- -5'
27596 3' -60.1 NC_005882.1 + 14203 0.69 0.20959
Target:  5'- aCGCUCGCGCG-GGCcaGCgUCGCgAu- -3'
miRNA:   3'- -GCGAGCGCGCaCCGcaCG-AGCGgUuu -5'
27596 3' -60.1 NC_005882.1 + 3385 0.69 0.19333
Target:  5'- aCGCUUGCGCGcgGGCGcUGCgcgGCCu-- -3'
miRNA:   3'- -GCGAGCGCGCa-CCGC-ACGag-CGGuuu -5'
27596 3' -60.1 NC_005882.1 + 5079 0.71 0.159638
Target:  5'- gCGCUgGCGUaucGGCGUGC-CGCCGGu -3'
miRNA:   3'- -GCGAgCGCGca-CCGCACGaGCGGUUu -5'
27596 3' -60.1 NC_005882.1 + 25888 0.71 0.155281
Target:  5'- uGCUCggGCGCGUGGCGacgGCcacgaaCGCCGAc -3'
miRNA:   3'- gCGAG--CGCGCACCGCa--CGa-----GCGGUUu -5'
27596 3' -60.1 NC_005882.1 + 29380 0.71 0.146889
Target:  5'- cCGCgaucgUCGCcaGCGUGGUGUGCUCGUa--- -3'
miRNA:   3'- -GCG-----AGCG--CGCACCGCACGAGCGguuu -5'
27596 3' -60.1 NC_005882.1 + 12717 0.72 0.12769
Target:  5'- aCGCa-GCGCGcGGCGgcGCUCGCCGGc -3'
miRNA:   3'- -GCGagCGCGCaCCGCa-CGAGCGGUUu -5'
27596 3' -60.1 NC_005882.1 + 6651 0.79 0.038855
Target:  5'- gCGC-CGUGCGUcucGGCGUGCUgCGCCAAGg -3'
miRNA:   3'- -GCGaGCGCGCA---CCGCACGA-GCGGUUU- -5'
27596 3' -60.1 NC_005882.1 + 19849 1.05 0.000307
Target:  5'- gCGCUCGCGCGUGGCGUGCUCGCCAAAu -3'
miRNA:   3'- -GCGAGCGCGCACCGCACGAGCGGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.