miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27597 3' -60.6 NC_005882.1 + 21106 0.66 0.308424
Target:  5'- aACUGgaagCG-GUUCaGGCCGGCGGCagCGGUa -3'
miRNA:   3'- -UGGUa---GCaCAAG-CCGGCCGCCG--GCUA- -5'
27597 3' -60.6 NC_005882.1 + 19028 0.66 0.308424
Target:  5'- uCUcUCGgcgUCGGCCGGCaaccugcaGGCCGAa -3'
miRNA:   3'- uGGuAGCacaAGCCGGCCG--------CCGGCUa -5'
27597 3' -60.6 NC_005882.1 + 8704 0.67 0.293474
Target:  5'- cGCCGUCGacgcagcccUGUUCcuCCaGGUGGCCGAUa -3'
miRNA:   3'- -UGGUAGC---------ACAAGccGG-CCGCCGGCUA- -5'
27597 3' -60.6 NC_005882.1 + 27133 0.67 0.286214
Target:  5'- gGCCAgcUCGUGaaCGGCCugauGCuGGCCGGg -3'
miRNA:   3'- -UGGU--AGCACaaGCCGGc---CG-CCGGCUa -5'
27597 3' -60.6 NC_005882.1 + 4224 0.67 0.279096
Target:  5'- gGCCGUCGUcgcGgaaUCGGgCGGCGGCaagaCGAc -3'
miRNA:   3'- -UGGUAGCA---Ca--AGCCgGCCGCCG----GCUa -5'
27597 3' -60.6 NC_005882.1 + 28311 0.67 0.265284
Target:  5'- cGCCggCGgcaccuugggcUGUaCGGCCGGCGGCUuGAa -3'
miRNA:   3'- -UGGuaGC-----------ACAaGCCGGCCGCCGG-CUa -5'
27597 3' -60.6 NC_005882.1 + 17854 0.68 0.227164
Target:  5'- gAUCAUCGUGcgaGGCaucaaggucgaGGCGGCCGGc -3'
miRNA:   3'- -UGGUAGCACaagCCGg----------CCGCCGGCUa -5'
27597 3' -60.6 NC_005882.1 + 25162 0.69 0.214959
Target:  5'- nGCCGUCGUGgcCGGCuccuaccucaucgCGGCGG-CGAUc -3'
miRNA:   3'- -UGGUAGCACaaGCCG-------------GCCGCCgGCUA- -5'
27597 3' -60.6 NC_005882.1 + 8152 0.69 0.204406
Target:  5'- gGCCGUCGcGUcgCGGCCGGuCGGgaugUCGAUg -3'
miRNA:   3'- -UGGUAGCaCAa-GCCGGCC-GCC----GGCUA- -5'
27597 3' -60.6 NC_005882.1 + 25214 0.69 0.186641
Target:  5'- uGCCgAUCGUGUUCGGCaucguggcguuuuuCGGCuucgccuuccucgGGCCGGc -3'
miRNA:   3'- -UGG-UAGCACAAGCCG--------------GCCG-------------CCGGCUa -5'
27597 3' -60.6 NC_005882.1 + 12528 0.73 0.102697
Target:  5'- gGCCAgUGUGUcgCGG-CGGCGGCCGGc -3'
miRNA:   3'- -UGGUaGCACAa-GCCgGCCGCCGGCUa -5'
27597 3' -60.6 NC_005882.1 + 25120 0.78 0.043263
Target:  5'- gGCCAUCGUGUggcuuugCGGCCGGCucgggcGCCGGg -3'
miRNA:   3'- -UGGUAGCACAa------GCCGGCCGc-----CGGCUa -5'
27597 3' -60.6 NC_005882.1 + 20566 1.04 0.000383
Target:  5'- cACCAUCGUGUUCGGCCGGCGGCCGAUc -3'
miRNA:   3'- -UGGUAGCACAAGCCGGCCGCCGGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.