Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27598 | 3' | -56.5 | NC_005882.1 | + | 30258 | 0.66 | 0.516574 |
Target: 5'- aGCCguacGcGCGCgaaGCCGGGCU-UCGACGc- -3' miRNA: 3'- -CGGa---C-CGCG---UGGCUCGAaAGCUGCua -5' |
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27598 | 3' | -56.5 | NC_005882.1 | + | 13035 | 0.66 | 0.49516 |
Target: 5'- uCCUGGCGUACCccggaaucaaGGGCgucaUCGGCGc- -3' miRNA: 3'- cGGACCGCGUGG----------CUCGaa--AGCUGCua -5' |
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27598 | 3' | -56.5 | NC_005882.1 | + | 17641 | 0.66 | 0.520902 |
Target: 5'- gGCCuacaUGGCGgGCCGcuacgccgagcaaauGGCgaacgUCGACGAUc -3' miRNA: 3'- -CGG----ACCGCgUGGC---------------UCGaa---AGCUGCUA- -5' |
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27598 | 3' | -56.5 | NC_005882.1 | + | 11968 | 0.66 | 0.516574 |
Target: 5'- gGCgCUGGCuaccGCGCCGAGCU---GACGc- -3' miRNA: 3'- -CG-GACCG----CGUGGCUCGAaagCUGCua -5' |
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27598 | 3' | -56.5 | NC_005882.1 | + | 12252 | 0.66 | 0.484605 |
Target: 5'- gGCC-GGUGCAUgCGAGCgcaUGGCGAUg -3' miRNA: 3'- -CGGaCCGCGUG-GCUCGaaaGCUGCUA- -5' |
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27598 | 3' | -56.5 | NC_005882.1 | + | 7615 | 0.67 | 0.463826 |
Target: 5'- gGCCUGGaguGCGCCGAGC-----ACGAa -3' miRNA: 3'- -CGGACCg--CGUGGCUCGaaagcUGCUa -5' |
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27598 | 3' | -56.5 | NC_005882.1 | + | 9569 | 0.67 | 0.463826 |
Target: 5'- uCCUGGCGCGUCGuGCUUgCGGCc-- -3' miRNA: 3'- cGGACCGCGUGGCuCGAAaGCUGcua -5' |
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27598 | 3' | -56.5 | NC_005882.1 | + | 35103 | 0.67 | 0.43356 |
Target: 5'- cCUUGGCGCACCGuuuAGCgaugugcCGAUGGUu -3' miRNA: 3'- cGGACCGCGUGGC---UCGaaa----GCUGCUA- -5' |
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27598 | 3' | -56.5 | NC_005882.1 | + | 27534 | 0.67 | 0.43356 |
Target: 5'- cGCCcagGGCGCcgcaaucggcAUCGGGCgcucgUCGGCGGUc -3' miRNA: 3'- -CGGa--CCGCG----------UGGCUCGaa---AGCUGCUA- -5' |
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27598 | 3' | -56.5 | NC_005882.1 | + | 12548 | 0.67 | 0.463826 |
Target: 5'- gGCC-GGCGCugCG-GCgaUCGGCGc- -3' miRNA: 3'- -CGGaCCGCGugGCuCGaaAGCUGCua -5' |
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27598 | 3' | -56.5 | NC_005882.1 | + | 25477 | 0.67 | 0.474158 |
Target: 5'- uGCCUcGCGCGC--AGCUcgUCGGCGAc -3' miRNA: 3'- -CGGAcCGCGUGgcUCGAa-AGCUGCUa -5' |
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27598 | 3' | -56.5 | NC_005882.1 | + | 29178 | 0.68 | 0.395056 |
Target: 5'- cGCC-GGCGCGCCGuuGCUcgCGuGCGGc -3' miRNA: 3'- -CGGaCCGCGUGGCu-CGAaaGC-UGCUa -5' |
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27598 | 3' | -56.5 | NC_005882.1 | + | 22142 | 0.68 | 0.404474 |
Target: 5'- gGCCugUGGCaGUACgugauCGAGUUUUCGGCGGg -3' miRNA: 3'- -CGG--ACCG-CGUG-----GCUCGAAAGCUGCUa -5' |
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27598 | 3' | -56.5 | NC_005882.1 | + | 6640 | 0.69 | 0.358831 |
Target: 5'- cGUCgugcGGCGCGCCGuGCgucUCGGCGu- -3' miRNA: 3'- -CGGa---CCGCGUGGCuCGaa-AGCUGCua -5' |
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27598 | 3' | -56.5 | NC_005882.1 | + | 19868 | 0.69 | 0.367666 |
Target: 5'- uCCgaaGCGCGCCGAGCUg--GACGGc -3' miRNA: 3'- cGGac-CGCGUGGCUCGAaagCUGCUa -5' |
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27598 | 3' | -56.5 | NC_005882.1 | + | 21423 | 0.69 | 0.367666 |
Target: 5'- ---cGGCGCACCG-GCgc-CGACGAc -3' miRNA: 3'- cggaCCGCGUGGCuCGaaaGCUGCUa -5' |
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27598 | 3' | -56.5 | NC_005882.1 | + | 19144 | 0.69 | 0.324995 |
Target: 5'- cGCCcGGCGCcgaCGAGU--UCGGCGAa -3' miRNA: 3'- -CGGaCCGCGug-GCUCGaaAGCUGCUa -5' |
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27598 | 3' | -56.5 | NC_005882.1 | + | 5078 | 0.7 | 0.285379 |
Target: 5'- uGCgCUGGCGUAUCGgcgugccgccgguAGCUUUCGcCGAUc -3' miRNA: 3'- -CG-GACCGCGUGGC-------------UCGAAAGCuGCUA- -5' |
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27598 | 3' | -56.5 | NC_005882.1 | + | 12813 | 0.7 | 0.308988 |
Target: 5'- uCgaGcGCGUGCCGGGCUUcUCGGCGAa -3' miRNA: 3'- cGgaC-CGCGUGGCUCGAA-AGCUGCUa -5' |
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27598 | 3' | -56.5 | NC_005882.1 | + | 3442 | 0.7 | 0.316916 |
Target: 5'- uGCCUGaCgGCACgCGGGUUUUCGACGc- -3' miRNA: 3'- -CGGACcG-CGUG-GCUCGAAAGCUGCua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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