miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27598 5' -60.9 NC_005882.1 + 26773 0.66 0.371346
Target:  5'- gGAUCGgcCGggaugggCGGCcgcgaacuGCgCGGUGCGCUGg -3'
miRNA:   3'- aCUAGCa-GCa------GCCG--------CG-GCCACGCGGC- -5'
27598 5' -60.9 NC_005882.1 + 3678 0.66 0.371346
Target:  5'- gUGAUCGaCGcaagCGGCGUCGacGCGCUGc -3'
miRNA:   3'- -ACUAGCaGCa---GCCGCGGCcaCGCGGC- -5'
27598 5' -60.9 NC_005882.1 + 32592 0.66 0.371346
Target:  5'- uUGAgcUUGUCGagGGCaUCGGUgGCGCCu -3'
miRNA:   3'- -ACU--AGCAGCagCCGcGGCCA-CGCGGc -5'
27598 5' -60.9 NC_005882.1 + 18973 0.66 0.362845
Target:  5'- cGAUCGUCaUCGGCcauCCGcGcgacaacGCGCCGg -3'
miRNA:   3'- aCUAGCAGcAGCCGc--GGC-Ca------CGCGGC- -5'
27598 5' -60.9 NC_005882.1 + 12824 0.66 0.346251
Target:  5'- ------cCGccCGGCGCCGGaUGCGCCu -3'
miRNA:   3'- acuagcaGCa-GCCGCGGCC-ACGCGGc -5'
27598 5' -60.9 NC_005882.1 + 17103 0.66 0.346251
Target:  5'- cGA-CG-CG-CaGGCGCUGGUcGCGCCGc -3'
miRNA:   3'- aCUaGCaGCaG-CCGCGGCCA-CGCGGC- -5'
27598 5' -60.9 NC_005882.1 + 18202 0.66 0.338161
Target:  5'- aGAUCG-CG-CaGGCGCUGGUGCugGUCa -3'
miRNA:   3'- aCUAGCaGCaG-CCGCGGCCACG--CGGc -5'
27598 5' -60.9 NC_005882.1 + 31803 0.66 0.320078
Target:  5'- cGAUCGUCGacgUCGGCGUaauCGGUccggaaauggaaauGCGCg- -3'
miRNA:   3'- aCUAGCAGC---AGCCGCG---GCCA--------------CGCGgc -5'
27598 5' -60.9 NC_005882.1 + 17727 0.67 0.317774
Target:  5'- cGAUCGUCGacguucgccauuugcUCGGCGUagCGGccCGCCa -3'
miRNA:   3'- aCUAGCAGC---------------AGCCGCG--GCCacGCGGc -5'
27598 5' -60.9 NC_005882.1 + 15079 0.67 0.307185
Target:  5'- cUGAUCGagucgcgcaUGUCGGCugacacGCCGGUgcuGCGCUGg -3'
miRNA:   3'- -ACUAGCa--------GCAGCCG------CGGCCA---CGCGGC- -5'
27598 5' -60.9 NC_005882.1 + 21258 0.67 0.307185
Target:  5'- cGAccUCGgcaugcUCGUCGa--CCGGUGCGCCGg -3'
miRNA:   3'- aCU--AGC------AGCAGCcgcGGCCACGCGGC- -5'
27598 5' -60.9 NC_005882.1 + 12603 0.67 0.299788
Target:  5'- cGAUCGcCG-CaGCGCCGGccGCcGCCGc -3'
miRNA:   3'- aCUAGCaGCaGcCGCGGCCa-CG-CGGC- -5'
27598 5' -60.9 NC_005882.1 + 29846 0.67 0.295417
Target:  5'- cGGUCGagaugCGgggcgacacgaagcUGGcCGCCGGUGCGUCGa -3'
miRNA:   3'- aCUAGCa----GCa-------------GCC-GCGGCCACGCGGC- -5'
27598 5' -60.9 NC_005882.1 + 12901 0.67 0.285409
Target:  5'- ---cCGcCGcCGGCGCCgauGGUGUGCCc -3'
miRNA:   3'- acuaGCaGCaGCCGCGG---CCACGCGGc -5'
27598 5' -60.9 NC_005882.1 + 3575 0.67 0.278426
Target:  5'- cGAUCG-CGUCGcGUGCUGGUcaucgugaGCCGa -3'
miRNA:   3'- aCUAGCaGCAGC-CGCGGCCAcg------CGGC- -5'
27598 5' -60.9 NC_005882.1 + 393 0.67 0.278426
Target:  5'- aGGUCG-CGUUGGCGagCGGcgaucuccucGCGCCGg -3'
miRNA:   3'- aCUAGCaGCAGCCGCg-GCCa---------CGCGGC- -5'
27598 5' -60.9 NC_005882.1 + 29377 0.67 0.278426
Target:  5'- cGAUCGUCGcCaGCG-UGGUGUGCuCGu -3'
miRNA:   3'- aCUAGCAGCaGcCGCgGCCACGCG-GC- -5'
27598 5' -60.9 NC_005882.1 + 31457 0.67 0.278426
Target:  5'- ---gCGUCGUCuuCGCgGGcUGCGCCGg -3'
miRNA:   3'- acuaGCAGCAGccGCGgCC-ACGCGGC- -5'
27598 5' -60.9 NC_005882.1 + 13014 0.67 0.278426
Target:  5'- aGggCGUCaUCGGCGCgGGccgGCGCa- -3'
miRNA:   3'- aCuaGCAGcAGCCGCGgCCa--CGCGgc -5'
27598 5' -60.9 NC_005882.1 + 3263 0.68 0.27158
Target:  5'- gGAUCGUCGgcCGGcCGCCGucGCGCgGc -3'
miRNA:   3'- aCUAGCAGCa-GCC-GCGGCcaCGCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.