miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27598 5' -60.9 NC_005882.1 + 393 0.67 0.278426
Target:  5'- aGGUCG-CGUUGGCGagCGGcgaucuccucGCGCCGg -3'
miRNA:   3'- aCUAGCaGCAGCCGCg-GCCa---------CGCGGC- -5'
27598 5' -60.9 NC_005882.1 + 3263 0.68 0.27158
Target:  5'- gGAUCGUCGgcCGGcCGCCGucGCGCgGc -3'
miRNA:   3'- aCUAGCAGCa-GCC-GCGGCcaCGCGgC- -5'
27598 5' -60.9 NC_005882.1 + 3575 0.67 0.278426
Target:  5'- cGAUCG-CGUCGcGUGCUGGUcaucgugaGCCGa -3'
miRNA:   3'- aCUAGCaGCAGC-CGCGGCCAcg------CGGC- -5'
27598 5' -60.9 NC_005882.1 + 3678 0.66 0.371346
Target:  5'- gUGAUCGaCGcaagCGGCGUCGacGCGCUGc -3'
miRNA:   3'- -ACUAGCaGCa---GCCGCGGCcaCGCGGC- -5'
27598 5' -60.9 NC_005882.1 + 5329 0.79 0.038628
Target:  5'- cGAcgUGUCGUCGGUGCCGG-GCGUCa -3'
miRNA:   3'- aCUa-GCAGCAGCCGCGGCCaCGCGGc -5'
27598 5' -60.9 NC_005882.1 + 6633 0.72 0.13729
Target:  5'- aUGAagUCGUCGUgCGGCGCgCcGUGCGUCu -3'
miRNA:   3'- -ACU--AGCAGCA-GCCGCG-GcCACGCGGc -5'
27598 5' -60.9 NC_005882.1 + 11847 0.73 0.119716
Target:  5'- gUGAUCGUCcUCGGCGUCGuagucgGCGUCGc -3'
miRNA:   3'- -ACUAGCAGcAGCCGCGGCca----CGCGGC- -5'
27598 5' -60.9 NC_005882.1 + 11914 0.73 0.116462
Target:  5'- -uGUCGUCGcguugcUCGGCGCCGccGCGCCc -3'
miRNA:   3'- acUAGCAGC------AGCCGCGGCcaCGCGGc -5'
27598 5' -60.9 NC_005882.1 + 12321 0.71 0.153024
Target:  5'- cGAUCagcgCGUgaCGGCuGCCGGcgGCGCCGa -3'
miRNA:   3'- aCUAGca--GCA--GCCG-CGGCCa-CGCGGC- -5'
27598 5' -60.9 NC_005882.1 + 12586 0.7 0.189467
Target:  5'- cGGUCGcuuUCuUCGGCggcuaucacGCCGGUGCGCUu -3'
miRNA:   3'- aCUAGC---AGcAGCCG---------CGGCCACGCGGc -5'
27598 5' -60.9 NC_005882.1 + 12603 0.67 0.299788
Target:  5'- cGAUCGcCG-CaGCGCCGGccGCcGCCGc -3'
miRNA:   3'- aCUAGCaGCaGcCGCGGCCa-CG-CGGC- -5'
27598 5' -60.9 NC_005882.1 + 12824 0.66 0.346251
Target:  5'- ------cCGccCGGCGCCGGaUGCGCCu -3'
miRNA:   3'- acuagcaGCa-GCCGCGGCC-ACGCGGc -5'
27598 5' -60.9 NC_005882.1 + 12901 0.67 0.285409
Target:  5'- ---cCGcCGcCGGCGCCgauGGUGUGCCc -3'
miRNA:   3'- acuaGCaGCaGCCGCGG---CCACGCGGc -5'
27598 5' -60.9 NC_005882.1 + 12969 0.71 0.170376
Target:  5'- cUGGUCG-CGggcacaccaUCGGCGCCGGcgGCGgCGu -3'
miRNA:   3'- -ACUAGCaGC---------AGCCGCGGCCa-CGCgGC- -5'
27598 5' -60.9 NC_005882.1 + 13014 0.67 0.278426
Target:  5'- aGggCGUCaUCGGCGCgGGccgGCGCa- -3'
miRNA:   3'- aCuaGCAGcAGCCGCGgCCa--CGCGgc -5'
27598 5' -60.9 NC_005882.1 + 14876 0.7 0.179697
Target:  5'- uUGAacgCGUUGUCGaCGCCGucGUGCGUCGa -3'
miRNA:   3'- -ACUa--GCAGCAGCcGCGGC--CACGCGGC- -5'
27598 5' -60.9 NC_005882.1 + 15079 0.67 0.307185
Target:  5'- cUGAUCGagucgcgcaUGUCGGCugacacGCCGGUgcuGCGCUGg -3'
miRNA:   3'- -ACUAGCa--------GCAGCCG------CGGCCA---CGCGGC- -5'
27598 5' -60.9 NC_005882.1 + 17103 0.66 0.346251
Target:  5'- cGA-CG-CG-CaGGCGCUGGUcGCGCCGc -3'
miRNA:   3'- aCUaGCaGCaG-CCGCGGCCA-CGCGGC- -5'
27598 5' -60.9 NC_005882.1 + 17727 0.67 0.317774
Target:  5'- cGAUCGUCGacguucgccauuugcUCGGCGUagCGGccCGCCa -3'
miRNA:   3'- aCUAGCAGC---------------AGCCGCG--GCCacGCGGc -5'
27598 5' -60.9 NC_005882.1 + 18202 0.66 0.338161
Target:  5'- aGAUCG-CG-CaGGCGCUGGUGCugGUCa -3'
miRNA:   3'- aCUAGCaGCaG-CCGCGGCCACG--CGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.