miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27599 3' -57.5 NC_005882.1 + 31456 0.66 0.503147
Target:  5'- cGUCGucuucGCGGGCugcgccgGCAGCCGcGUcacGCCGa -3'
miRNA:   3'- -CAGC-----UGCCCGua-----UGUCGGU-CA---CGGCc -5'
27599 3' -57.5 NC_005882.1 + 18006 0.66 0.503147
Target:  5'- cGUCGGCuGGaGC-UACAaccCCGGUGCCGcGg -3'
miRNA:   3'- -CAGCUG-CC-CGuAUGUc--GGUCACGGC-C- -5'
27599 3' -57.5 NC_005882.1 + 25456 0.66 0.486431
Target:  5'- -gCGACGcGGCcga-GGCCAuucagcgucgugcgcGUGCCGGa -3'
miRNA:   3'- caGCUGC-CCGuaugUCGGU---------------CACGGCC- -5'
27599 3' -57.5 NC_005882.1 + 34788 0.66 0.4792
Target:  5'- -gCGGCGccaacaugcccgccGGCuAUGCGGCCAGUGCg-- -3'
miRNA:   3'- caGCUGC--------------CCG-UAUGUCGGUCACGgcc -5'
27599 3' -57.5 NC_005882.1 + 2926 0.66 0.472023
Target:  5'- cGUUGuuCGcGGCucGCAgGUCGGUGCCGGu -3'
miRNA:   3'- -CAGCu-GC-CCGuaUGU-CGGUCACGGCC- -5'
27599 3' -57.5 NC_005882.1 + 22644 0.66 0.461866
Target:  5'- cGUCGACGcGGCGcaguuCGGCCcgcAGcucGCCGGc -3'
miRNA:   3'- -CAGCUGC-CCGUau---GUCGG---UCa--CGGCC- -5'
27599 3' -57.5 NC_005882.1 + 22455 0.67 0.441904
Target:  5'- gGUCGACGGcGC-UGCGGCCGGcuucagguaGCCc- -3'
miRNA:   3'- -CAGCUGCC-CGuAUGUCGGUCa--------CGGcc -5'
27599 3' -57.5 NC_005882.1 + 17843 0.67 0.422439
Target:  5'- uUCGGCGGGUAgaacgACuGCCAGaa-CGGa -3'
miRNA:   3'- cAGCUGCCCGUa----UGuCGGUCacgGCC- -5'
27599 3' -57.5 NC_005882.1 + 16003 0.67 0.403498
Target:  5'- cGUCGGCGGGUgcGUGCGccGCCgcaAGgcgGCCGu -3'
miRNA:   3'- -CAGCUGCCCG--UAUGU--CGG---UCa--CGGCc -5'
27599 3' -57.5 NC_005882.1 + 28243 0.68 0.385105
Target:  5'- -cCGcCGGcCGUACAGCCcaaGGUGCCGc -3'
miRNA:   3'- caGCuGCCcGUAUGUCGG---UCACGGCc -5'
27599 3' -57.5 NC_005882.1 + 21200 0.68 0.376118
Target:  5'- gGUCGACGaGCAUGCcgaggucgAGUCGGacgcgGCCGGc -3'
miRNA:   3'- -CAGCUGCcCGUAUG--------UCGGUCa----CGGCC- -5'
27599 3' -57.5 NC_005882.1 + 26945 0.68 0.362037
Target:  5'- --gGGCGGGCGcggccggcaaguucGCGGCCGugaucgggcGUGCCGGg -3'
miRNA:   3'- cagCUGCCCGUa-------------UGUCGGU---------CACGGCC- -5'
27599 3' -57.5 NC_005882.1 + 30846 0.69 0.341611
Target:  5'- uGUCGGagagcUGGGuCAUGCGGCCAuGuUGCCGc -3'
miRNA:   3'- -CAGCU-----GCCC-GUAUGUCGGU-C-ACGGCc -5'
27599 3' -57.5 NC_005882.1 + 18477 0.69 0.301779
Target:  5'- uUCGGCGGGCA---AGCCGGU-CgCGGa -3'
miRNA:   3'- cAGCUGCCCGUaugUCGGUCAcG-GCC- -5'
27599 3' -57.5 NC_005882.1 + 27896 0.7 0.294256
Target:  5'- uUCGACGGGUucgAUGCGaCCuucGGUGCCGa -3'
miRNA:   3'- cAGCUGCCCG---UAUGUcGG---UCACGGCc -5'
27599 3' -57.5 NC_005882.1 + 30319 0.7 0.265625
Target:  5'- gGUCG-CGGuGCuccuggACAGCCGGUGCgaGGa -3'
miRNA:   3'- -CAGCuGCC-CGua----UGUCGGUCACGg-CC- -5'
27599 3' -57.5 NC_005882.1 + 12003 0.72 0.221004
Target:  5'- cUCGGCGGGCAcuugcGCGGCCAcggGCgCGGc -3'
miRNA:   3'- cAGCUGCCCGUa----UGUCGGUca-CG-GCC- -5'
27599 3' -57.5 NC_005882.1 + 23432 0.73 0.182932
Target:  5'- cGUCGgcgucACGGGCGUcgaGCGGCCGcUGUCGGc -3'
miRNA:   3'- -CAGC-----UGCCCGUA---UGUCGGUcACGGCC- -5'
27599 3' -57.5 NC_005882.1 + 21638 1.1 0.000282
Target:  5'- gGUCGACGGGCAUACAGCCAGUGCCGGg -3'
miRNA:   3'- -CAGCUGCCCGUAUGUCGGUCACGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.