Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27599 | 3' | -57.5 | NC_005882.1 | + | 23432 | 0.73 | 0.182932 |
Target: 5'- cGUCGgcgucACGGGCGUcgaGCGGCCGcUGUCGGc -3' miRNA: 3'- -CAGC-----UGCCCGUA---UGUCGGUcACGGCC- -5' |
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27599 | 3' | -57.5 | NC_005882.1 | + | 18006 | 0.66 | 0.503147 |
Target: 5'- cGUCGGCuGGaGC-UACAaccCCGGUGCCGcGg -3' miRNA: 3'- -CAGCUG-CC-CGuAUGUc--GGUCACGGC-C- -5' |
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27599 | 3' | -57.5 | NC_005882.1 | + | 34788 | 0.66 | 0.4792 |
Target: 5'- -gCGGCGccaacaugcccgccGGCuAUGCGGCCAGUGCg-- -3' miRNA: 3'- caGCUGC--------------CCG-UAUGUCGGUCACGgcc -5' |
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27599 | 3' | -57.5 | NC_005882.1 | + | 2926 | 0.66 | 0.472023 |
Target: 5'- cGUUGuuCGcGGCucGCAgGUCGGUGCCGGu -3' miRNA: 3'- -CAGCu-GC-CCGuaUGU-CGGUCACGGCC- -5' |
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27599 | 3' | -57.5 | NC_005882.1 | + | 22644 | 0.66 | 0.461866 |
Target: 5'- cGUCGACGcGGCGcaguuCGGCCcgcAGcucGCCGGc -3' miRNA: 3'- -CAGCUGC-CCGUau---GUCGG---UCa--CGGCC- -5' |
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27599 | 3' | -57.5 | NC_005882.1 | + | 16003 | 0.67 | 0.403498 |
Target: 5'- cGUCGGCGGGUgcGUGCGccGCCgcaAGgcgGCCGu -3' miRNA: 3'- -CAGCUGCCCG--UAUGU--CGG---UCa--CGGCc -5' |
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27599 | 3' | -57.5 | NC_005882.1 | + | 28243 | 0.68 | 0.385105 |
Target: 5'- -cCGcCGGcCGUACAGCCcaaGGUGCCGc -3' miRNA: 3'- caGCuGCCcGUAUGUCGG---UCACGGCc -5' |
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27599 | 3' | -57.5 | NC_005882.1 | + | 21200 | 0.68 | 0.376118 |
Target: 5'- gGUCGACGaGCAUGCcgaggucgAGUCGGacgcgGCCGGc -3' miRNA: 3'- -CAGCUGCcCGUAUG--------UCGGUCa----CGGCC- -5' |
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27599 | 3' | -57.5 | NC_005882.1 | + | 26945 | 0.68 | 0.362037 |
Target: 5'- --gGGCGGGCGcggccggcaaguucGCGGCCGugaucgggcGUGCCGGg -3' miRNA: 3'- cagCUGCCCGUa-------------UGUCGGU---------CACGGCC- -5' |
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27599 | 3' | -57.5 | NC_005882.1 | + | 18477 | 0.69 | 0.301779 |
Target: 5'- uUCGGCGGGCA---AGCCGGU-CgCGGa -3' miRNA: 3'- cAGCUGCCCGUaugUCGGUCAcG-GCC- -5' |
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27599 | 3' | -57.5 | NC_005882.1 | + | 27896 | 0.7 | 0.294256 |
Target: 5'- uUCGACGGGUucgAUGCGaCCuucGGUGCCGa -3' miRNA: 3'- cAGCUGCCCG---UAUGUcGG---UCACGGCc -5' |
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27599 | 3' | -57.5 | NC_005882.1 | + | 30319 | 0.7 | 0.265625 |
Target: 5'- gGUCG-CGGuGCuccuggACAGCCGGUGCgaGGa -3' miRNA: 3'- -CAGCuGCC-CGua----UGUCGGUCACGg-CC- -5' |
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27599 | 3' | -57.5 | NC_005882.1 | + | 25456 | 0.66 | 0.486431 |
Target: 5'- -gCGACGcGGCcga-GGCCAuucagcgucgugcgcGUGCCGGa -3' miRNA: 3'- caGCUGC-CCGuaugUCGGU---------------CACGGCC- -5' |
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27599 | 3' | -57.5 | NC_005882.1 | + | 22455 | 0.67 | 0.441904 |
Target: 5'- gGUCGACGGcGC-UGCGGCCGGcuucagguaGCCc- -3' miRNA: 3'- -CAGCUGCC-CGuAUGUCGGUCa--------CGGcc -5' |
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27599 | 3' | -57.5 | NC_005882.1 | + | 17843 | 0.67 | 0.422439 |
Target: 5'- uUCGGCGGGUAgaacgACuGCCAGaa-CGGa -3' miRNA: 3'- cAGCUGCCCGUa----UGuCGGUCacgGCC- -5' |
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27599 | 3' | -57.5 | NC_005882.1 | + | 30846 | 0.69 | 0.341611 |
Target: 5'- uGUCGGagagcUGGGuCAUGCGGCCAuGuUGCCGc -3' miRNA: 3'- -CAGCU-----GCCC-GUAUGUCGGU-C-ACGGCc -5' |
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27599 | 3' | -57.5 | NC_005882.1 | + | 12003 | 0.72 | 0.221004 |
Target: 5'- cUCGGCGGGCAcuugcGCGGCCAcggGCgCGGc -3' miRNA: 3'- cAGCUGCCCGUa----UGUCGGUca-CG-GCC- -5' |
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27599 | 3' | -57.5 | NC_005882.1 | + | 21638 | 1.1 | 0.000282 |
Target: 5'- gGUCGACGGGCAUACAGCCAGUGCCGGg -3' miRNA: 3'- -CAGCUGCCCGUAUGUCGGUCACGGCC- -5' |
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27599 | 3' | -57.5 | NC_005882.1 | + | 31456 | 0.66 | 0.503147 |
Target: 5'- cGUCGucuucGCGGGCugcgccgGCAGCCGcGUcacGCCGa -3' miRNA: 3'- -CAGC-----UGCCCGua-----UGUCGGU-CA---CGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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