miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2760 3' -60.2 NC_001491.2 + 117644 0.66 0.7294
Target:  5'- cGGGCcGGAGCCCUcACc-GGCUC-CCCa -3'
miRNA:   3'- -UCUGaCCUCGGGA-UGucUCGGGcGGG- -5'
2760 3' -60.2 NC_001491.2 + 139782 0.66 0.719749
Target:  5'- cGGACgcaGAGCgCUACuGGGCCgCGCUa -3'
miRNA:   3'- -UCUGac-CUCGgGAUGuCUCGG-GCGGg -5'
2760 3' -60.2 NC_001491.2 + 114406 0.66 0.710027
Target:  5'- cGACUGGgAGCCCggguuCGGcuCUCGCuCCa -3'
miRNA:   3'- uCUGACC-UCGGGau---GUCucGGGCG-GG- -5'
2760 3' -60.2 NC_001491.2 + 74411 0.66 0.690401
Target:  5'- uAGACUGGuugauuGGCCC---AGAGCuCCGUUCg -3'
miRNA:   3'- -UCUGACC------UCGGGaugUCUCG-GGCGGG- -5'
2760 3' -60.2 NC_001491.2 + 147746 0.67 0.680515
Target:  5'- cGGGCcggGGGGCCgCUGCAGcGGgCCGCg- -3'
miRNA:   3'- -UCUGa--CCUCGG-GAUGUC-UCgGGCGgg -5'
2760 3' -60.2 NC_001491.2 + 116149 0.67 0.64067
Target:  5'- cGGAggGGAGCCUU-CAGAcCCUGCCg -3'
miRNA:   3'- -UCUgaCCUCGGGAuGUCUcGGGCGGg -5'
2760 3' -60.2 NC_001491.2 + 115176 0.67 0.630674
Target:  5'- uGGACcGGGGCCCcggACGucucGGCCCucaacGCCCa -3'
miRNA:   3'- -UCUGaCCUCGGGa--UGUc---UCGGG-----CGGG- -5'
2760 3' -60.2 NC_001491.2 + 31897 0.68 0.620678
Target:  5'- cGGugU-GAGCC--GCGGuGCCCGCCUu -3'
miRNA:   3'- -UCugAcCUCGGgaUGUCuCGGGCGGG- -5'
2760 3' -60.2 NC_001491.2 + 149136 0.68 0.610691
Target:  5'- gAGGCgGGAGUCUagGCGGAGUCUGCg- -3'
miRNA:   3'- -UCUGaCCUCGGGa-UGUCUCGGGCGgg -5'
2760 3' -60.2 NC_001491.2 + 119383 0.68 0.600719
Target:  5'- uAGGCUaGAGCCgCUACAc-GCCCaccGCCCa -3'
miRNA:   3'- -UCUGAcCUCGG-GAUGUcuCGGG---CGGG- -5'
2760 3' -60.2 NC_001491.2 + 121532 0.68 0.59077
Target:  5'- uGGCUGGAGCgUggggACGGGuccCCCGCCg -3'
miRNA:   3'- uCUGACCUCGgGa---UGUCUc--GGGCGGg -5'
2760 3' -60.2 NC_001491.2 + 116343 0.68 0.59077
Target:  5'- -cGCUGGuGCgCUACaacgccgagGGGGCCCggGCCCg -3'
miRNA:   3'- ucUGACCuCGgGAUG---------UCUCGGG--CGGG- -5'
2760 3' -60.2 NC_001491.2 + 16954 0.68 0.580849
Target:  5'- ----aGGGGCUCUGCGGGGCguuUUGCCCc -3'
miRNA:   3'- ucugaCCUCGGGAUGUCUCG---GGCGGG- -5'
2760 3' -60.2 NC_001491.2 + 147529 0.69 0.541576
Target:  5'- cGGCUGGcaugggucccagGGCCCgg-GGAGCCUggugGCCCg -3'
miRNA:   3'- uCUGACC------------UCGGGaugUCUCGGG----CGGG- -5'
2760 3' -60.2 NC_001491.2 + 128509 0.69 0.541576
Target:  5'- gGGuCUGGGGUCCUGu--GGCCUGCCUc -3'
miRNA:   3'- -UCuGACCUCGGGAUgucUCGGGCGGG- -5'
2760 3' -60.2 NC_001491.2 + 114546 0.7 0.503228
Target:  5'- gGGGCcgUGGAGCCCU-CGGAGCUUcugaucCCCg -3'
miRNA:   3'- -UCUG--ACCUCGGGAuGUCUCGGGc-----GGG- -5'
2760 3' -60.2 NC_001491.2 + 45231 0.7 0.493822
Target:  5'- uGGCcGGGGCCgCgGCGGGGgCCGCCg -3'
miRNA:   3'- uCUGaCCUCGG-GaUGUCUCgGGCGGg -5'
2760 3' -60.2 NC_001491.2 + 45198 0.7 0.493822
Target:  5'- uGGCcGGGGCCgCgGCGGGGgCCGCCg -3'
miRNA:   3'- uCUGaCCUCGG-GaUGUCUCgGGCGGg -5'
2760 3' -60.2 NC_001491.2 + 45165 0.7 0.493822
Target:  5'- uGGCcGGGGCCgCgGCGGGGgCCGCCg -3'
miRNA:   3'- uCUGaCCUCGG-GaUGUCUCgGGCGGg -5'
2760 3' -60.2 NC_001491.2 + 45264 0.7 0.493822
Target:  5'- uGGCcGGGGCCgCgGCGGGGgCCGCCg -3'
miRNA:   3'- uCUGaCCUCGG-GaUGUCUCgGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.