miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2760 5' -54.2 NC_001491.2 + 123508 0.66 0.935911
Target:  5'- gCGcAGGUAcgcCGCGGCGGcUGCgUGGCg- -3'
miRNA:   3'- -GC-UCUAUau-GCGCCGUC-ACG-ACCGau -5'
2760 5' -54.2 NC_001491.2 + 32065 0.66 0.925334
Target:  5'- -aGGGUGUACGUGGCGGUGa--GCa- -3'
miRNA:   3'- gcUCUAUAUGCGCCGUCACgacCGau -5'
2760 5' -54.2 NC_001491.2 + 94288 0.66 0.925334
Target:  5'- gGAGuGUGgAUGCGGCAGauaGCUGGUg- -3'
miRNA:   3'- gCUC-UAUaUGCGCCGUCa--CGACCGau -5'
2760 5' -54.2 NC_001491.2 + 1858 0.67 0.913747
Target:  5'- aCGAGcucGUACGCGGguGgcgcCUGGCa- -3'
miRNA:   3'- -GCUCua-UAUGCGCCguCac--GACCGau -5'
2760 5' -54.2 NC_001491.2 + 49971 0.67 0.913747
Target:  5'- aGGGAUGUuuuuuCGCuGGCcucccaGGUGCUGGaCUGa -3'
miRNA:   3'- gCUCUAUAu----GCG-CCG------UCACGACC-GAU- -5'
2760 5' -54.2 NC_001491.2 + 12201 0.68 0.873064
Target:  5'- aGAGAUGgagaGCGCGaGCAGaagcUGCUGGgaGa -3'
miRNA:   3'- gCUCUAUa---UGCGC-CGUC----ACGACCgaU- -5'
2760 5' -54.2 NC_001491.2 + 144710 0.68 0.857628
Target:  5'- aGcAGGUcggGCGCGGCGG-GCUGGgUGa -3'
miRNA:   3'- gC-UCUAua-UGCGCCGUCaCGACCgAU- -5'
2760 5' -54.2 NC_001491.2 + 12933 0.69 0.815402
Target:  5'- --cGAUaGUGCGCGGCAGUGCucauaccucgccUGGUa- -3'
miRNA:   3'- gcuCUA-UAUGCGCCGUCACG------------ACCGau -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.