Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27603 | 3' | -52.6 | NC_005882.1 | + | 4946 | 0.66 | 0.727261 |
Target: 5'- aCGAccucgUUGCGcCGCGCGUcgaacUCGCGCc--- -3' miRNA: 3'- -GCUa----AGCGC-GCGCGCA-----AGCGUGaaag -5' |
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27603 | 3' | -52.6 | NC_005882.1 | + | 6055 | 0.69 | 0.567554 |
Target: 5'- gGAUggaCGCcauacaugcguaGCGCGCGUugaaUCGCGCUaUCg -3' miRNA: 3'- gCUAa--GCG------------CGCGCGCA----AGCGUGAaAG- -5' |
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27603 | 3' | -52.6 | NC_005882.1 | + | 9493 | 0.66 | 0.770651 |
Target: 5'- gCGAUUgGCGCGCugGCGgcCGCAa---- -3' miRNA: 3'- -GCUAAgCGCGCG--CGCaaGCGUgaaag -5' |
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27603 | 3' | -52.6 | NC_005882.1 | + | 10889 | 0.75 | 0.286975 |
Target: 5'- gGGUUCgucgcaGCGCGCGCGggCGCAUgcggaUUUCg -3' miRNA: 3'- gCUAAG------CGCGCGCGCaaGCGUG-----AAAG- -5' |
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27603 | 3' | -52.6 | NC_005882.1 | + | 12199 | 0.66 | 0.760005 |
Target: 5'- uCGAUUCGUGCGCuCGUgcgGUACg--- -3' miRNA: 3'- -GCUAAGCGCGCGcGCAag-CGUGaaag -5' |
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27603 | 3' | -52.6 | NC_005882.1 | + | 12716 | 0.66 | 0.727261 |
Target: 5'- ---aUCGCGCGCGcCGUcugCGUAUUggCg -3' miRNA: 3'- gcuaAGCGCGCGC-GCAa--GCGUGAaaG- -5' |
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27603 | 3' | -52.6 | NC_005882.1 | + | 12775 | 0.66 | 0.727261 |
Target: 5'- gCGAgcgccgcCGCGCGCuGCGUcucCGCGCgUUCc -3' miRNA: 3'- -GCUaa-----GCGCGCG-CGCAa--GCGUGaAAG- -5' |
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27603 | 3' | -52.6 | NC_005882.1 | + | 15069 | 0.7 | 0.500814 |
Target: 5'- ---gUCGCGCGCGCugaucgagUCGCGCaugUCg -3' miRNA: 3'- gcuaAGCGCGCGCGca------AGCGUGaa-AG- -5' |
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27603 | 3' | -52.6 | NC_005882.1 | + | 16700 | 0.75 | 0.265031 |
Target: 5'- gCGAcgUCGaCGCGCGCGUcCGCGCa--- -3' miRNA: 3'- -GCUa-AGC-GCGCGCGCAaGCGUGaaag -5' |
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27603 | 3' | -52.6 | NC_005882.1 | + | 20242 | 0.69 | 0.556238 |
Target: 5'- uCGAUUCGacCGgGCGCGcagCGCGCgUUCc -3' miRNA: 3'- -GCUAAGC--GCgCGCGCaa-GCGUGaAAG- -5' |
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27603 | 3' | -52.6 | NC_005882.1 | + | 21737 | 0.69 | 0.578927 |
Target: 5'- aGGUcCGCGCGCGCcgUCGCcagUUCg -3' miRNA: 3'- gCUAaGCGCGCGCGcaAGCGugaAAG- -5' |
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27603 | 3' | -52.6 | NC_005882.1 | + | 23357 | 0.66 | 0.760005 |
Target: 5'- ---aUCGCGUGCGgCGggccuucgCGCACgugUCg -3' miRNA: 3'- gcuaAGCGCGCGC-GCaa------GCGUGaa-AG- -5' |
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27603 | 3' | -52.6 | NC_005882.1 | + | 24582 | 1.11 | 0.000884 |
Target: 5'- uCGAUUCGCGCGCGCGUUCGCACUUUCa -3' miRNA: 3'- -GCUAAGCGCGCGCGCAAGCGUGAAAG- -5' |
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27603 | 3' | -52.6 | NC_005882.1 | + | 27004 | 0.69 | 0.544989 |
Target: 5'- gGAUUCGgGCGCGg---CGCGCUcgUCg -3' miRNA: 3'- gCUAAGCgCGCGCgcaaGCGUGAa-AG- -5' |
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27603 | 3' | -52.6 | NC_005882.1 | + | 27571 | 0.67 | 0.70489 |
Target: 5'- gCGGUcgcCGCGCGCGCGgcCGCcgGCa--- -3' miRNA: 3'- -GCUAa--GCGCGCGCGCaaGCG--UGaaag -5' |
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27603 | 3' | -52.6 | NC_005882.1 | + | 27873 | 0.67 | 0.716121 |
Target: 5'- ----aCGCGCG-GCGcUCGCGCUUc- -3' miRNA: 3'- gcuaaGCGCGCgCGCaAGCGUGAAag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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