Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27603 | 5' | -57.6 | NC_005882.1 | + | 24546 | 1.03 | 0.000595 |
Target: 5'- uAAAAAAGGCCCGCCGAAGCGGGCCAAg -3' miRNA: 3'- -UUUUUUCCGGGCGGCUUCGCCCGGUU- -5' |
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27603 | 5' | -57.6 | NC_005882.1 | + | 24485 | 0.75 | 0.103479 |
Target: 5'- -----uGGCCCGCUucGGCGGGCCu- -3' miRNA: 3'- uuuuuuCCGGGCGGcuUCGCCCGGuu -5' |
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27603 | 5' | -57.6 | NC_005882.1 | + | 11954 | 0.74 | 0.109763 |
Target: 5'- ---cAAGuGCCCGCCGAGGCGcuGGCUAc -3' miRNA: 3'- uuuuUUC-CGGGCGGCUUCGC--CCGGUu -5' |
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27603 | 5' | -57.6 | NC_005882.1 | + | 23413 | 0.72 | 0.146877 |
Target: 5'- --cGAAGGCCCGCCGcacgcgaugaGAGCGGcuCCAGg -3' miRNA: 3'- uuuUUUCCGGGCGGC----------UUCGCCc-GGUU- -5' |
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27603 | 5' | -57.6 | NC_005882.1 | + | 6409 | 0.72 | 0.160074 |
Target: 5'- -----cGGCCUGCCGcGAGCuGGGCCu- -3' miRNA: 3'- uuuuuuCCGGGCGGC-UUCG-CCCGGuu -5' |
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27603 | 5' | -57.6 | NC_005882.1 | + | 4763 | 0.71 | 0.189709 |
Target: 5'- -----cGGCCCGC--GAGCGGGUCAAc -3' miRNA: 3'- uuuuuuCCGGGCGgcUUCGCCCGGUU- -5' |
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27603 | 5' | -57.6 | NC_005882.1 | + | 25731 | 0.7 | 0.208566 |
Target: 5'- -----cGGCCUGCCGAacagcgccgauuacgGGCGcGGCCGu -3' miRNA: 3'- uuuuuuCCGGGCGGCU---------------UCGC-CCGGUu -5' |
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27603 | 5' | -57.6 | NC_005882.1 | + | 23226 | 0.69 | 0.256597 |
Target: 5'- ---cAGGcGCUgGCCGGGcGCGGGCCGg -3' miRNA: 3'- uuuuUUC-CGGgCGGCUU-CGCCCGGUu -5' |
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27603 | 5' | -57.6 | NC_005882.1 | + | 33094 | 0.69 | 0.270659 |
Target: 5'- ---cAAGGCuuGCCGAacuGGUcGGCCAAg -3' miRNA: 3'- uuuuUUCCGggCGGCU---UCGcCCGGUU- -5' |
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27603 | 5' | -57.6 | NC_005882.1 | + | 27137 | 0.68 | 0.285334 |
Target: 5'- ----uGGGCgagcaGCCGcAGCGGGCCGAu -3' miRNA: 3'- uuuuuUCCGgg---CGGCuUCGCCCGGUU- -5' |
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27603 | 5' | -57.6 | NC_005882.1 | + | 3943 | 0.68 | 0.308513 |
Target: 5'- ---cAGGGCCUuguggagcuGCgCGAAGCGGGCUu- -3' miRNA: 3'- uuuuUUCCGGG---------CG-GCUUCGCCCGGuu -5' |
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27603 | 5' | -57.6 | NC_005882.1 | + | 15261 | 0.67 | 0.333101 |
Target: 5'- ----cGGGagCGCCGugagcAGCGGGCCGAg -3' miRNA: 3'- uuuuuUCCggGCGGCu----UCGCCCGGUU- -5' |
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27603 | 5' | -57.6 | NC_005882.1 | + | 22650 | 0.67 | 0.341611 |
Target: 5'- -----cGGCCCGaUCGguGCGGuGCCGAu -3' miRNA: 3'- uuuuuuCCGGGC-GGCuuCGCC-CGGUU- -5' |
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27603 | 5' | -57.6 | NC_005882.1 | + | 9939 | 0.67 | 0.350276 |
Target: 5'- ----cGGGCCguauuggcucgCGCCGGugccaAGCGGGUCAAa -3' miRNA: 3'- uuuuuUCCGG-----------GCGGCU-----UCGCCCGGUU- -5' |
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27603 | 5' | -57.6 | NC_005882.1 | + | 15460 | 0.66 | 0.377199 |
Target: 5'- --cGAAGGCgCCGCCcguGAAGCgcgGGaGCCGAu -3' miRNA: 3'- uuuUUUCCG-GGCGG---CUUCG---CC-CGGUU- -5' |
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27603 | 5' | -57.6 | NC_005882.1 | + | 24377 | 0.66 | 0.40548 |
Target: 5'- ----uAGGUCgCGCCGAAcGCGGaGCUGAa -3' miRNA: 3'- uuuuuUCCGG-GCGGCUU-CGCC-CGGUU- -5' |
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27603 | 5' | -57.6 | NC_005882.1 | + | 24813 | 0.66 | 0.4152 |
Target: 5'- aGGGAcGGGauaCCGCCGGAaauGCGGGCg-- -3' miRNA: 3'- -UUUUuUCCg--GGCGGCUU---CGCCCGguu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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