Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27604 | 3' | -57.8 | NC_005882.1 | + | 27132 | 0.67 | 0.382345 |
|
Target: 5'- -cGGCCAgcUCGUGaacGGCcugaUGCuGGCCGg -3' miRNA: 3'- uuCCGGU--AGCACa--CCGaa--ACG-CCGGC- -5' |
|||||||
| 27604 | 3' | -57.8 | NC_005882.1 | + | 25163 | 0.68 | 0.30596 |
|
Target: 5'- -cGGCCGUCGUGgccGGCUccuaccucaUcGCGGCgGc -3' miRNA: 3'- uuCCGGUAGCACa--CCGA---------AaCGCCGgC- -5' |
|||||||
| 27604 | 3' | -57.8 | NC_005882.1 | + | 22462 | 0.69 | 0.290657 |
|
Target: 5'- cGGGCUugGUCGac-GGCgcUGCGGCCGg -3' miRNA: 3'- uUCCGG--UAGCacaCCGaaACGCCGGC- -5' |
|||||||
| 27604 | 3' | -57.8 | NC_005882.1 | + | 11677 | 0.69 | 0.271669 |
|
Target: 5'- -cGGCCGUCGUcgcGUacuggcucgaucgcgGGCUUUucccguacgcGCGGCCGg -3' miRNA: 3'- uuCCGGUAGCA---CA---------------CCGAAA----------CGCCGGC- -5' |
|||||||
| 27604 | 3' | -57.8 | NC_005882.1 | + | 32169 | 0.71 | 0.209559 |
|
Target: 5'- cAGGCCGgcggcacgaucgguUCG-GUaGGCUUcUGCGGCCGu -3' miRNA: 3'- uUCCGGU--------------AGCaCA-CCGAA-ACGCCGGC- -5' |
|||||||
| 27604 | 3' | -57.8 | NC_005882.1 | + | 20583 | 0.72 | 0.166514 |
|
Target: 5'- uAGGCCGacgcaccgaucaccaUCGUGUucGGCcg-GCGGCCGa -3' miRNA: 3'- uUCCGGU---------------AGCACA--CCGaaaCGCCGGC- -5' |
|||||||
| 27604 | 3' | -57.8 | NC_005882.1 | + | 4529 | 0.72 | 0.160086 |
|
Target: 5'- cGAGGUCGUCGa--GGCUgcGCGGCCa -3' miRNA: 3'- -UUCCGGUAGCacaCCGAaaCGCCGGc -5' |
|||||||
| 27604 | 3' | -57.8 | NC_005882.1 | + | 12527 | 0.73 | 0.135006 |
|
Target: 5'- -cGGCCAgUGUGUcgcGGCg--GCGGCCGg -3' miRNA: 3'- uuCCGGUaGCACA---CCGaaaCGCCGGC- -5' |
|||||||
| 27604 | 3' | -57.8 | NC_005882.1 | + | 25123 | 1.07 | 0.00037 |
|
Target: 5'- cAAGGCCAUCGUGUGGCUUUGCGGCCGg -3' miRNA: 3'- -UUCCGGUAGCACACCGAAACGCCGGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home