miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27604 5' -56.9 NC_005882.1 + 15700 0.66 0.519897
Target:  5'- gGCC-GGUCGCgCgGACGUCcGGGAU-GCg -3'
miRNA:   3'- -CGGcCCGGCG-GaCUGUAG-UCCUAaCG- -5'
27604 5' -56.9 NC_005882.1 + 19014 0.66 0.508147
Target:  5'- gGCUGGGUCGCUUcucucucGGCGUCGGccg-GCa -3'
miRNA:   3'- -CGGCCCGGCGGA-------CUGUAGUCcuaaCG- -5'
27604 5' -56.9 NC_005882.1 + 18088 0.66 0.477737
Target:  5'- gGUCaGGCUGCCacgccgcGGCAcCGGGGUUGUa -3'
miRNA:   3'- -CGGcCCGGCGGa------CUGUaGUCCUAACG- -5'
27604 5' -56.9 NC_005882.1 + 10074 0.66 0.477737
Target:  5'- -aCGcGGUucaGCCagGACGUCAGGuAUUGCu -3'
miRNA:   3'- cgGC-CCGg--CGGa-CUGUAGUCC-UAACG- -5'
27604 5' -56.9 NC_005882.1 + 26592 0.68 0.380606
Target:  5'- cGUgGGGCCGCUUucaGACG-CAG-AUUGCg -3'
miRNA:   3'- -CGgCCCGGCGGA---CUGUaGUCcUAACG- -5'
27604 5' -56.9 NC_005882.1 + 26955 0.68 0.370752
Target:  5'- gGCCGGcaaguucGCgGCC-GugAUCGGGcgUGCc -3'
miRNA:   3'- -CGGCC-------CGgCGGaCugUAGUCCuaACG- -5'
27604 5' -56.9 NC_005882.1 + 24086 0.69 0.354146
Target:  5'- uGCCGGGCgGCCUGgACAagCucGAagGCg -3'
miRNA:   3'- -CGGCCCGgCGGAC-UGUa-GucCUaaCG- -5'
27604 5' -56.9 NC_005882.1 + 21750 0.69 0.337241
Target:  5'- cGCCGGGCCGCUcGGgucgccgauCGUCAGcuuGUUGUc -3'
miRNA:   3'- -CGGCCCGGCGGaCU---------GUAGUCc--UAACG- -5'
27604 5' -56.9 NC_005882.1 + 9727 0.71 0.275581
Target:  5'- uCCGGGCCGgCUca-AUCGGGAgcgUUGCu -3'
miRNA:   3'- cGGCCCGGCgGAcugUAGUCCU---AACG- -5'
27604 5' -56.9 NC_005882.1 + 27179 0.77 0.096354
Target:  5'- gGCuCGGGCgCGCgCUGAUgcucaauccgAUCGGGAUUGCc -3'
miRNA:   3'- -CG-GCCCG-GCG-GACUG----------UAGUCCUAACG- -5'
27604 5' -56.9 NC_005882.1 + 25089 1.13 0.000191
Target:  5'- cGCCGGGCCGCCUGACAUCAGGAUUGCu -3'
miRNA:   3'- -CGGCCCGGCGGACUGUAGUCCUAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.