miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27605 3' -57.6 NC_005882.1 + 16055 0.66 0.484966
Target:  5'- gGCCUCGACCGUgG-CAAggcgaagaGUCGUGUc -3'
miRNA:   3'- -CGGGGCUGGCAgCaGUUa-------CGGCACGa -5'
27605 3' -57.6 NC_005882.1 + 16806 0.66 0.474719
Target:  5'- cGCCuuGucGCCGUCG-CGAUGUCGUcCg -3'
miRNA:   3'- -CGGggC--UGGCAGCaGUUACGGCAcGa -5'
27605 3' -57.6 NC_005882.1 + 25404 0.66 0.474719
Target:  5'- gGCCUCGGCCG-CGUC---GCCGacgaGCUg -3'
miRNA:   3'- -CGGGGCUGGCaGCAGuuaCGGCa---CGA- -5'
27605 3' -57.6 NC_005882.1 + 28659 0.67 0.454556
Target:  5'- cGUCCCGAUCGUCGcguUCGccaaGCCGccuUGCg -3'
miRNA:   3'- -CGGGGCUGGCAGC---AGUua--CGGC---ACGa -5'
27605 3' -57.6 NC_005882.1 + 26832 0.67 0.448598
Target:  5'- gGCCgCGAgCGUCGcgaccuucaugccgaUCAcgGCCGuUGCg -3'
miRNA:   3'- -CGGgGCUgGCAGC---------------AGUuaCGGC-ACGa -5'
27605 3' -57.6 NC_005882.1 + 25177 0.67 0.44465
Target:  5'- cGCCuuccucgggCCGGCCGUCGUg---GCCG-GCUc -3'
miRNA:   3'- -CGG---------GGCUGGCAGCAguuaCGGCaCGA- -5'
27605 3' -57.6 NC_005882.1 + 19873 0.67 0.434867
Target:  5'- gGCgCCCG-UCGUCGUCAc-GCCG-GCg -3'
miRNA:   3'- -CG-GGGCuGGCAGCAGUuaCGGCaCGa -5'
27605 3' -57.6 NC_005882.1 + 27691 0.67 0.434867
Target:  5'- cGCCCCGAgCUG-CGUUGAUGCgcUGCa -3'
miRNA:   3'- -CGGGGCU-GGCaGCAGUUACGgcACGa -5'
27605 3' -57.6 NC_005882.1 + 14312 0.67 0.41568
Target:  5'- cGCgUCGGCCG-CGUCAucggacagGCCGcUGCUc -3'
miRNA:   3'- -CGgGGCUGGCaGCAGUua------CGGC-ACGA- -5'
27605 3' -57.6 NC_005882.1 + 14216 0.67 0.406283
Target:  5'- cGCCgCGGCCGUCGaCAagGUCGUcaagaGCa -3'
miRNA:   3'- -CGGgGCUGGCAGCaGUuaCGGCA-----CGa -5'
27605 3' -57.6 NC_005882.1 + 5330 0.68 0.370063
Target:  5'- ---aCGACgUGUCGUCGGUGCCGgGCg -3'
miRNA:   3'- cgggGCUG-GCAGCAGUUACGGCaCGa -5'
27605 3' -57.6 NC_005882.1 + 23015 0.68 0.358776
Target:  5'- cGCCuuGGCCGcCGUCGcacccggcggaaucGUGCCG-GUUu -3'
miRNA:   3'- -CGGggCUGGCaGCAGU--------------UACGGCaCGA- -5'
27605 3' -57.6 NC_005882.1 + 4231 0.69 0.344384
Target:  5'- gGCuCCUGGCCGUCGUCGcgGaauCGgGCg -3'
miRNA:   3'- -CG-GGGCUGGCAGCAGUuaCg--GCaCGa -5'
27605 3' -57.6 NC_005882.1 + 32786 0.69 0.336114
Target:  5'- aGUCUCGAauaCCGUCGU--GUGCCGaUGCg -3'
miRNA:   3'- -CGGGGCU---GGCAGCAguUACGGC-ACGa -5'
27605 3' -57.6 NC_005882.1 + 27660 0.69 0.31218
Target:  5'- cGCCgCGGCCGcggccugCGUCGccAUGCCG-GCg -3'
miRNA:   3'- -CGGgGCUGGCa------GCAGU--UACGGCaCGa -5'
27605 3' -57.6 NC_005882.1 + 29382 0.71 0.261431
Target:  5'- aGCCgCGAUCGUCGcCAgcGUGgUGUGCUc -3'
miRNA:   3'- -CGGgGCUGGCAGCaGU--UACgGCACGA- -5'
27605 3' -57.6 NC_005882.1 + 10462 0.71 0.248221
Target:  5'- uCgCCGGCCGgcUCGUCAGUGCuugcguCGUGCg -3'
miRNA:   3'- cGgGGCUGGC--AGCAGUUACG------GCACGa -5'
27605 3' -57.6 NC_005882.1 + 26904 1.1 0.000314
Target:  5'- cGCCCCGACCGUCGUCAAUGCCGUGCUg -3'
miRNA:   3'- -CGGGGCUGGCAGCAGUUACGGCACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.