miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27607 3' -60.5 NC_005882.1 + 19769 0.66 0.340048
Target:  5'- gCUGCCgaaggucguCGAAuuuGGcGAGCacgccacgcgcgAGCGCGcCGGCg -3'
miRNA:   3'- -GACGG---------GCUUu--CC-CUCG------------UCGCGC-GCCG- -5'
27607 3' -60.5 NC_005882.1 + 19263 0.66 0.331927
Target:  5'- -gGCCCuuGAGGGccGGCGGCuGCGCa-- -3'
miRNA:   3'- gaCGGGcuUUCCC--UCGUCG-CGCGccg -5'
27607 3' -60.5 NC_005882.1 + 27562 0.66 0.331927
Target:  5'- -cGCUCGucGGcGGucGCcgcGCGCGCGGCc -3'
miRNA:   3'- gaCGGGCuuUC-CCu-CGu--CGCGCGCCG- -5'
27607 3' -60.5 NC_005882.1 + 10865 0.66 0.307663
Target:  5'- gCUGUCCGcGAucaaccuggucguGGGuucgucGCAGCGCGCgcgGGCg -3'
miRNA:   3'- -GACGGGCuUU-------------CCCu-----CGUCGCGCG---CCG- -5'
27607 3' -60.5 NC_005882.1 + 3264 0.67 0.293474
Target:  5'- gCUGCgCGAgcGuGcGGGCGGCGUcacuguccaGCGGCa -3'
miRNA:   3'- -GACGgGCUuuC-C-CUCGUCGCG---------CGCCG- -5'
27607 3' -60.5 NC_005882.1 + 14184 0.67 0.292742
Target:  5'- -cGCCUGGAGGugcaggcacgcgcGGaAGCGGcCGCcGCGGCc -3'
miRNA:   3'- gaCGGGCUUUC-------------CC-UCGUC-GCG-CGCCG- -5'
27607 3' -60.5 NC_005882.1 + 33054 0.67 0.286214
Target:  5'- aCUGCUCGAccugcgccuucAGGuAGC-GCGUGCGGCc -3'
miRNA:   3'- -GACGGGCUu----------UCCcUCGuCGCGCGCCG- -5'
27607 3' -60.5 NC_005882.1 + 25718 0.67 0.272119
Target:  5'- -aGCgCCGAuuacGGGcGCGGC-CGUGGCa -3'
miRNA:   3'- gaCG-GGCUuu--CCCuCGUCGcGCGCCG- -5'
27607 3' -60.5 NC_005882.1 + 28655 0.67 0.272119
Target:  5'- -aGCUCucGAcGGcGAGCAGCGCgcuaaguuccGCGGCg -3'
miRNA:   3'- gaCGGGcuUU-CC-CUCGUCGCG----------CGCCG- -5'
27607 3' -60.5 NC_005882.1 + 4859 0.67 0.265284
Target:  5'- -cGCCuCGAucAGcGaGAGCGGCGCgaguucgacgcGCGGCg -3'
miRNA:   3'- gaCGG-GCUu-UC-C-CUCGUCGCG-----------CGCCG- -5'
27607 3' -60.5 NC_005882.1 + 23813 0.68 0.252031
Target:  5'- aUGCCUuGAAGccGAGCAGCGCGCcGUc -3'
miRNA:   3'- gACGGGcUUUCc-CUCGUCGCGCGcCG- -5'
27607 3' -60.5 NC_005882.1 + 27142 0.68 0.252031
Target:  5'- -cGCCCu--GGGcGAGCAGCcGCaGCGGg -3'
miRNA:   3'- gaCGGGcuuUCC-CUCGUCG-CG-CGCCg -5'
27607 3' -60.5 NC_005882.1 + 23797 0.68 0.245611
Target:  5'- --aCCCGAAAGaGGAGCuGGCG-GcCGGCc -3'
miRNA:   3'- gacGGGCUUUC-CCUCG-UCGCgC-GCCG- -5'
27607 3' -60.5 NC_005882.1 + 18913 0.68 0.245611
Target:  5'- cCUGCCCGGAAaauGuGGAGUGGUuucGCGUucauGGCg -3'
miRNA:   3'- -GACGGGCUUU---C-CCUCGUCG---CGCG----CCG- -5'
27607 3' -60.5 NC_005882.1 + 31583 0.68 0.238706
Target:  5'- -gGCUCGAucGGGAacggcugGCAGC-CGgGGCa -3'
miRNA:   3'- gaCGGGCUuuCCCU-------CGUCGcGCgCCG- -5'
27607 3' -60.5 NC_005882.1 + 27224 0.68 0.233179
Target:  5'- -cGCCCGAGccaGAGCAccGCGCGCccGGCc -3'
miRNA:   3'- gaCGGGCUUuccCUCGU--CGCGCG--CCG- -5'
27607 3' -60.5 NC_005882.1 + 10128 0.69 0.215527
Target:  5'- uUGuCCCGAgcGGGcguagauugGGCGGCGCuugguGCGGUg -3'
miRNA:   3'- gAC-GGGCUuuCCC---------UCGUCGCG-----CGCCG- -5'
27607 3' -60.5 NC_005882.1 + 6462 0.69 0.204406
Target:  5'- -cGCCC---AGGcAGC-GCGCGCGGCc -3'
miRNA:   3'- gaCGGGcuuUCCcUCGuCGCGCGCCG- -5'
27607 3' -60.5 NC_005882.1 + 28026 0.69 0.204406
Target:  5'- uUGCgauCCGGAAGccGAGCuggcgaagcuGCGCGCGGCg -3'
miRNA:   3'- gACG---GGCUUUCc-CUCGu---------CGCGCGCCG- -5'
27607 3' -60.5 NC_005882.1 + 22476 0.69 0.193785
Target:  5'- -cGCCguGAAGGGAGUcugAGCGaugGCGGCa -3'
miRNA:   3'- gaCGGgcUUUCCCUCG---UCGCg--CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.