Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27607 | 3' | -60.5 | NC_005882.1 | + | 19769 | 0.66 | 0.340048 |
Target: 5'- gCUGCCgaaggucguCGAAuuuGGcGAGCacgccacgcgcgAGCGCGcCGGCg -3' miRNA: 3'- -GACGG---------GCUUu--CC-CUCG------------UCGCGC-GCCG- -5' |
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27607 | 3' | -60.5 | NC_005882.1 | + | 19263 | 0.66 | 0.331927 |
Target: 5'- -gGCCCuuGAGGGccGGCGGCuGCGCa-- -3' miRNA: 3'- gaCGGGcuUUCCC--UCGUCG-CGCGccg -5' |
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27607 | 3' | -60.5 | NC_005882.1 | + | 27562 | 0.66 | 0.331927 |
Target: 5'- -cGCUCGucGGcGGucGCcgcGCGCGCGGCc -3' miRNA: 3'- gaCGGGCuuUC-CCu-CGu--CGCGCGCCG- -5' |
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27607 | 3' | -60.5 | NC_005882.1 | + | 10865 | 0.66 | 0.307663 |
Target: 5'- gCUGUCCGcGAucaaccuggucguGGGuucgucGCAGCGCGCgcgGGCg -3' miRNA: 3'- -GACGGGCuUU-------------CCCu-----CGUCGCGCG---CCG- -5' |
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27607 | 3' | -60.5 | NC_005882.1 | + | 3264 | 0.67 | 0.293474 |
Target: 5'- gCUGCgCGAgcGuGcGGGCGGCGUcacuguccaGCGGCa -3' miRNA: 3'- -GACGgGCUuuC-C-CUCGUCGCG---------CGCCG- -5' |
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27607 | 3' | -60.5 | NC_005882.1 | + | 33054 | 0.67 | 0.286214 |
Target: 5'- aCUGCUCGAccugcgccuucAGGuAGC-GCGUGCGGCc -3' miRNA: 3'- -GACGGGCUu----------UCCcUCGuCGCGCGCCG- -5' |
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27607 | 3' | -60.5 | NC_005882.1 | + | 25718 | 0.67 | 0.272119 |
Target: 5'- -aGCgCCGAuuacGGGcGCGGC-CGUGGCa -3' miRNA: 3'- gaCG-GGCUuu--CCCuCGUCGcGCGCCG- -5' |
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27607 | 3' | -60.5 | NC_005882.1 | + | 14184 | 0.67 | 0.292742 |
Target: 5'- -cGCCUGGAGGugcaggcacgcgcGGaAGCGGcCGCcGCGGCc -3' miRNA: 3'- gaCGGGCUUUC-------------CC-UCGUC-GCG-CGCCG- -5' |
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27607 | 3' | -60.5 | NC_005882.1 | + | 28655 | 0.67 | 0.272119 |
Target: 5'- -aGCUCucGAcGGcGAGCAGCGCgcuaaguuccGCGGCg -3' miRNA: 3'- gaCGGGcuUU-CC-CUCGUCGCG----------CGCCG- -5' |
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27607 | 3' | -60.5 | NC_005882.1 | + | 4859 | 0.67 | 0.265284 |
Target: 5'- -cGCCuCGAucAGcGaGAGCGGCGCgaguucgacgcGCGGCg -3' miRNA: 3'- gaCGG-GCUu-UC-C-CUCGUCGCG-----------CGCCG- -5' |
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27607 | 3' | -60.5 | NC_005882.1 | + | 23797 | 0.68 | 0.245611 |
Target: 5'- --aCCCGAAAGaGGAGCuGGCG-GcCGGCc -3' miRNA: 3'- gacGGGCUUUC-CCUCG-UCGCgC-GCCG- -5' |
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27607 | 3' | -60.5 | NC_005882.1 | + | 31583 | 0.68 | 0.238706 |
Target: 5'- -gGCUCGAucGGGAacggcugGCAGC-CGgGGCa -3' miRNA: 3'- gaCGGGCUuuCCCU-------CGUCGcGCgCCG- -5' |
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27607 | 3' | -60.5 | NC_005882.1 | + | 23813 | 0.68 | 0.252031 |
Target: 5'- aUGCCUuGAAGccGAGCAGCGCGCcGUc -3' miRNA: 3'- gACGGGcUUUCc-CUCGUCGCGCGcCG- -5' |
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27607 | 3' | -60.5 | NC_005882.1 | + | 27142 | 0.68 | 0.252031 |
Target: 5'- -cGCCCu--GGGcGAGCAGCcGCaGCGGg -3' miRNA: 3'- gaCGGGcuuUCC-CUCGUCG-CG-CGCCg -5' |
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27607 | 3' | -60.5 | NC_005882.1 | + | 18913 | 0.68 | 0.245611 |
Target: 5'- cCUGCCCGGAAaauGuGGAGUGGUuucGCGUucauGGCg -3' miRNA: 3'- -GACGGGCUUU---C-CCUCGUCG---CGCG----CCG- -5' |
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27607 | 3' | -60.5 | NC_005882.1 | + | 27224 | 0.68 | 0.233179 |
Target: 5'- -cGCCCGAGccaGAGCAccGCGCGCccGGCc -3' miRNA: 3'- gaCGGGCUUuccCUCGU--CGCGCG--CCG- -5' |
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27607 | 3' | -60.5 | NC_005882.1 | + | 10128 | 0.69 | 0.215527 |
Target: 5'- uUGuCCCGAgcGGGcguagauugGGCGGCGCuugguGCGGUg -3' miRNA: 3'- gAC-GGGCUuuCCC---------UCGUCGCG-----CGCCG- -5' |
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27607 | 3' | -60.5 | NC_005882.1 | + | 6462 | 0.69 | 0.204406 |
Target: 5'- -cGCCC---AGGcAGC-GCGCGCGGCc -3' miRNA: 3'- gaCGGGcuuUCCcUCGuCGCGCGCCG- -5' |
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27607 | 3' | -60.5 | NC_005882.1 | + | 22476 | 0.69 | 0.193785 |
Target: 5'- -cGCCguGAAGGGAGUcugAGCGaugGCGGCa -3' miRNA: 3'- gaCGGgcUUUCCCUCG---UCGCg--CGCCG- -5' |
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27607 | 3' | -60.5 | NC_005882.1 | + | 28026 | 0.69 | 0.204406 |
Target: 5'- uUGCgauCCGGAAGccGAGCuggcgaagcuGCGCGCGGCg -3' miRNA: 3'- gACG---GGCUUUCc-CUCGu---------CGCGCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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