miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27607 5' -54 NC_005882.1 + 27657 0.69 0.504299
Target:  5'- cGCgGCCGCgGCCUGcGUCgCCAUGccGGCGGc -3'
miRNA:   3'- -CG-CGGCG-CGGGCuUAG-GGUAU--UUGUC- -5'
27607 5' -54 NC_005882.1 + 12766 0.69 0.493563
Target:  5'- -gGCaCGCGCUCGAAUCCgAcgaacugAAACGGa -3'
miRNA:   3'- cgCG-GCGCGGGCUUAGGgUa------UUUGUC- -5'
27607 5' -54 NC_005882.1 + 26025 0.69 0.493563
Target:  5'- aGCGCCGCgucGCCCuuGAUCCCG--AGCGu -3'
miRNA:   3'- -CGCGGCG---CGGGc-UUAGGGUauUUGUc -5'
27607 5' -54 NC_005882.1 + 14409 0.7 0.462015
Target:  5'- cGCGCCGCGUUgGcuuGUCCUGgggcgAAGCAGc -3'
miRNA:   3'- -CGCGGCGCGGgCu--UAGGGUa----UUUGUC- -5'
27607 5' -54 NC_005882.1 + 25628 0.7 0.462015
Target:  5'- gGCGCCGCGCgccagCCGggUCgCAaGGGCc- -3'
miRNA:   3'- -CGCGGCGCG-----GGCuuAGgGUaUUUGuc -5'
27607 5' -54 NC_005882.1 + 22448 0.7 0.411924
Target:  5'- gGCGCUGCGgCCGGcuucagguagCCCAUcgcGAGCAGc -3'
miRNA:   3'- -CGCGGCGCgGGCUua--------GGGUA---UUUGUC- -5'
27607 5' -54 NC_005882.1 + 4159 0.71 0.392848
Target:  5'- uUGCCGcCGCCCGAuUCCgCGacGACGGc -3'
miRNA:   3'- cGCGGC-GCGGGCUuAGG-GUauUUGUC- -5'
27607 5' -54 NC_005882.1 + 17725 0.72 0.347744
Target:  5'- cCGCaCGCGCCCGAG-CCaucgggcaAUGAACGGc -3'
miRNA:   3'- cGCG-GCGCGGGCUUaGGg-------UAUUUGUC- -5'
27607 5' -54 NC_005882.1 + 35355 0.72 0.322512
Target:  5'- gGgGCCaCGCCaaCGggUCCUGUGGACAGu -3'
miRNA:   3'- -CgCGGcGCGG--GCuuAGGGUAUUUGUC- -5'
27607 5' -54 NC_005882.1 + 26994 0.73 0.306464
Target:  5'- -gGCCGCGCCCGcg-CCCAUGccgaaaaucugaAACAc -3'
miRNA:   3'- cgCGGCGCGGGCuuaGGGUAU------------UUGUc -5'
27607 5' -54 NC_005882.1 + 23778 0.73 0.297901
Target:  5'- -aGCUGCGCCCGAA-CCCGUucaccgacucgacGAGCGa -3'
miRNA:   3'- cgCGGCGCGGGCUUaGGGUA-------------UUUGUc -5'
27607 5' -54 NC_005882.1 + 20930 0.73 0.291034
Target:  5'- uCGCuCGCgGCaCCGAAUCCCGUAcuGACAc -3'
miRNA:   3'- cGCG-GCG-CG-GGCUUAGGGUAU--UUGUc -5'
27607 5' -54 NC_005882.1 + 21607 0.73 0.276219
Target:  5'- gGCGCCGCGCucCCGGAcaCCGUGucGCAGa -3'
miRNA:   3'- -CGCGGCGCG--GGCUUagGGUAUu-UGUC- -5'
27607 5' -54 NC_005882.1 + 33043 0.76 0.199749
Target:  5'- uCGCCGCGCCCGAccCgCAUucGCAGu -3'
miRNA:   3'- cGCGGCGCGGGCUuaGgGUAuuUGUC- -5'
27607 5' -54 NC_005882.1 + 27057 1.12 0.000496
Target:  5'- cGCGCCGCGCCCGAAUCCCAUAAACAGg -3'
miRNA:   3'- -CGCGGCGCGGGCUUAGGGUAUUUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.