miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27608 3' -60.5 NC_005882.1 + 32053 0.66 0.374004
Target:  5'- aAGGaUGCcgGCGCCGACacaaCGAUCGCGc- -3'
miRNA:   3'- -UCC-AUG--CGCGGCUGgc--GCUAGCGCca -5'
27608 3' -60.5 NC_005882.1 + 16040 0.66 0.374004
Target:  5'- -cGUGCGCGUCcGCgCGCaGcUCGCGGUa -3'
miRNA:   3'- ucCAUGCGCGGcUG-GCG-CuAGCGCCA- -5'
27608 3' -60.5 NC_005882.1 + 26844 0.66 0.365409
Target:  5'- cAGGccccaGCCGGCCGCGAgcgUCGCGa- -3'
miRNA:   3'- -UCCaugcgCGGCUGGCGCU---AGCGCca -5'
27608 3' -60.5 NC_005882.1 + 4904 0.66 0.365409
Target:  5'- gAGGU-CGUGuuCCGuGCCGCGG-CGCGGc -3'
miRNA:   3'- -UCCAuGCGC--GGC-UGGCGCUaGCGCCa -5'
27608 3' -60.5 NC_005882.1 + 32781 0.66 0.365409
Target:  5'- -cGUGCGCaGCaacGCCGCuuGAUCGUGGUg -3'
miRNA:   3'- ucCAUGCG-CGgc-UGGCG--CUAGCGCCA- -5'
27608 3' -60.5 NC_005882.1 + 27390 0.66 0.360317
Target:  5'- cGGGaGCccaaCGCCGAaccacccgagcacacCCGCGAaCGCGGUa -3'
miRNA:   3'- -UCCaUGc---GCGGCU---------------GGCGCUaGCGCCA- -5'
27608 3' -60.5 NC_005882.1 + 26943 0.66 0.348631
Target:  5'- uGGGgcggGCGCgGCCGgcaaguucgcgGCCGUGAUCGgGcGUg -3'
miRNA:   3'- -UCCa---UGCG-CGGC-----------UGGCGCUAGCgC-CA- -5'
27608 3' -60.5 NC_005882.1 + 15697 0.66 0.340451
Target:  5'- cGGU-CGCGCgGAcguCCGgGAUgCGCGGc -3'
miRNA:   3'- uCCAuGCGCGgCU---GGCgCUA-GCGCCa -5'
27608 3' -60.5 NC_005882.1 + 12614 0.66 0.332411
Target:  5'- cGGUGCGCuuGCCGGCgaCGCGAaggUCGCc-- -3'
miRNA:   3'- uCCAUGCG--CGGCUG--GCGCU---AGCGcca -5'
27608 3' -60.5 NC_005882.1 + 21809 0.67 0.316752
Target:  5'- cAGGUcCGCGUCGAacUgGCGAcggcgCGCGGg -3'
miRNA:   3'- -UCCAuGCGCGGCU--GgCGCUa----GCGCCa -5'
27608 3' -60.5 NC_005882.1 + 21736 0.67 0.316752
Target:  5'- aAGGUccgcGCGCGCCGucGCCaguuCGA-CGCGGa -3'
miRNA:   3'- -UCCA----UGCGCGGC--UGGc---GCUaGCGCCa -5'
27608 3' -60.5 NC_005882.1 + 27594 0.67 0.316752
Target:  5'- cGGcaugGCGaCGCaGGCCGCGGcCGCGGc -3'
miRNA:   3'- uCCa---UGC-GCGgCUGGCGCUaGCGCCa -5'
27608 3' -60.5 NC_005882.1 + 18245 0.67 0.309133
Target:  5'- ---cGCGCaagGCCGGCCGCGGUgGCaGGc -3'
miRNA:   3'- uccaUGCG---CGGCUGGCGCUAgCG-CCa -5'
27608 3' -60.5 NC_005882.1 + 15486 0.67 0.304629
Target:  5'- gAGGUauuggccguugccccGCGCGUCGAaggcgccgcCCGUGAagCGCGGg -3'
miRNA:   3'- -UCCA---------------UGCGCGGCU---------GGCGCUa-GCGCCa -5'
27608 3' -60.5 NC_005882.1 + 1948 0.67 0.301655
Target:  5'- ---cACuuuCGCUGGCCGCGAgcgucUCGCGGUa -3'
miRNA:   3'- uccaUGc--GCGGCUGGCGCU-----AGCGCCA- -5'
27608 3' -60.5 NC_005882.1 + 15964 0.67 0.300915
Target:  5'- cAGGUACaUGCCGAgCGCGAagaaaucaaugcuUCGCGc- -3'
miRNA:   3'- -UCCAUGcGCGGCUgGCGCU-------------AGCGCca -5'
27608 3' -60.5 NC_005882.1 + 20012 0.67 0.299438
Target:  5'- uGGcuUGCGCCGguuauuaacggaucACCGCGuUCGCGGc -3'
miRNA:   3'- uCCauGCGCGGC--------------UGGCGCuAGCGCCa -5'
27608 3' -60.5 NC_005882.1 + 16009 0.67 0.294317
Target:  5'- cGGGUGCguGCGCCG-CCGC-AagGCGGc -3'
miRNA:   3'- -UCCAUG--CGCGGCuGGCGcUagCGCCa -5'
27608 3' -60.5 NC_005882.1 + 12477 0.67 0.287119
Target:  5'- ---cACGCGCgGguaGCCGCGGuucUCGCGGa -3'
miRNA:   3'- uccaUGCGCGgC---UGGCGCU---AGCGCCa -5'
27608 3' -60.5 NC_005882.1 + 26765 0.68 0.28006
Target:  5'- cGGG-AUGgG-CGGCCGCGAacugCGCGGUg -3'
miRNA:   3'- -UCCaUGCgCgGCUGGCGCUa---GCGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.