miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27608 3' -60.5 NC_005882.1 + 1948 0.67 0.301655
Target:  5'- ---cACuuuCGCUGGCCGCGAgcgucUCGCGGUa -3'
miRNA:   3'- uccaUGc--GCGGCUGGCGCU-----AGCGCCA- -5'
27608 3' -60.5 NC_005882.1 + 3246 0.71 0.157632
Target:  5'- gAGGUACGgGCCGAuCUG-GAUCGuCGGc -3'
miRNA:   3'- -UCCAUGCgCGGCU-GGCgCUAGC-GCCa -5'
27608 3' -60.5 NC_005882.1 + 4904 0.66 0.365409
Target:  5'- gAGGU-CGUGuuCCGuGCCGCGG-CGCGGc -3'
miRNA:   3'- -UCCAuGCGC--GGC-UGGCGCUaGCGCCa -5'
27608 3' -60.5 NC_005882.1 + 12397 0.68 0.266357
Target:  5'- cGGcACGCgGCCGcuuuCCGCGAgaacCGCGGc -3'
miRNA:   3'- uCCaUGCG-CGGCu---GGCGCUa---GCGCCa -5'
27608 3' -60.5 NC_005882.1 + 12477 0.67 0.287119
Target:  5'- ---cACGCGCgGguaGCCGCGGuucUCGCGGa -3'
miRNA:   3'- uccaUGCGCGgC---UGGCGCU---AGCGCCa -5'
27608 3' -60.5 NC_005882.1 + 12614 0.66 0.332411
Target:  5'- cGGUGCGCuuGCCGGCgaCGCGAaggUCGCc-- -3'
miRNA:   3'- uCCAUGCG--CGGCUG--GCGCU---AGCGcca -5'
27608 3' -60.5 NC_005882.1 + 13915 0.68 0.27109
Target:  5'- cGGUACgggcagcguaucgaGCGCCGcuucGCCGCGAUCaaGGc -3'
miRNA:   3'- uCCAUG--------------CGCGGC----UGGCGCUAGcgCCa -5'
27608 3' -60.5 NC_005882.1 + 15486 0.67 0.304629
Target:  5'- gAGGUauuggccguugccccGCGCGUCGAaggcgccgcCCGUGAagCGCGGg -3'
miRNA:   3'- -UCCA---------------UGCGCGGCU---------GGCGCUa-GCGCCa -5'
27608 3' -60.5 NC_005882.1 + 15697 0.66 0.340451
Target:  5'- cGGU-CGCGCgGAcguCCGgGAUgCGCGGc -3'
miRNA:   3'- uCCAuGCGCGgCU---GGCgCUA-GCGCCa -5'
27608 3' -60.5 NC_005882.1 + 15813 0.73 0.123208
Target:  5'- uGGaGCgGCGCCG-CCGCGAcUUGCGGUc -3'
miRNA:   3'- uCCaUG-CGCGGCuGGCGCU-AGCGCCA- -5'
27608 3' -60.5 NC_005882.1 + 15959 0.69 0.239969
Target:  5'- cGGUAaggacucCGCGUCuACCGCGAgcugcgCGCGGa -3'
miRNA:   3'- uCCAU-------GCGCGGcUGGCGCUa-----GCGCCa -5'
27608 3' -60.5 NC_005882.1 + 15964 0.67 0.300915
Target:  5'- cAGGUACaUGCCGAgCGCGAagaaaucaaugcuUCGCGc- -3'
miRNA:   3'- -UCCAUGcGCGGCUgGCGCU-------------AGCGCca -5'
27608 3' -60.5 NC_005882.1 + 16009 0.67 0.294317
Target:  5'- cGGGUGCguGCGCCG-CCGC-AagGCGGc -3'
miRNA:   3'- -UCCAUG--CGCGGCuGGCGcUagCGCCa -5'
27608 3' -60.5 NC_005882.1 + 16040 0.66 0.374004
Target:  5'- -cGUGCGCGUCcGCgCGCaGcUCGCGGUa -3'
miRNA:   3'- ucCAUGCGCGGcUG-GCG-CuAGCGCCA- -5'
27608 3' -60.5 NC_005882.1 + 16958 0.68 0.253202
Target:  5'- ---cGCGCGCCGGCuUGCGucagcuuuugGUCGCGGc -3'
miRNA:   3'- uccaUGCGCGGCUG-GCGC----------UAGCGCCa -5'
27608 3' -60.5 NC_005882.1 + 18245 0.67 0.309133
Target:  5'- ---cGCGCaagGCCGGCCGCGGUgGCaGGc -3'
miRNA:   3'- uccaUGCG---CGGCUGGCGCUAgCG-CCa -5'
27608 3' -60.5 NC_005882.1 + 19920 0.81 0.027093
Target:  5'- aAGGUcgauuACGCGgCGGCCGCGAaCGCGGUg -3'
miRNA:   3'- -UCCA-----UGCGCgGCUGGCGCUaGCGCCA- -5'
27608 3' -60.5 NC_005882.1 + 20012 0.67 0.299438
Target:  5'- uGGcuUGCGCCGguuauuaacggaucACCGCGuUCGCGGc -3'
miRNA:   3'- uCCauGCGCGGC--------------UGGCGCuAGCGCCa -5'
27608 3' -60.5 NC_005882.1 + 21352 0.68 0.27314
Target:  5'- cGGaugACGuCGCCGGCCGCcGUCGCc-- -3'
miRNA:   3'- uCCa--UGC-GCGGCUGGCGcUAGCGcca -5'
27608 3' -60.5 NC_005882.1 + 21736 0.67 0.316752
Target:  5'- aAGGUccgcGCGCGCCGucGCCaguuCGA-CGCGGa -3'
miRNA:   3'- -UCCA----UGCGCGGC--UGGc---GCUaGCGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.