miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27608 3' -60.5 NC_005882.1 + 19920 0.81 0.027093
Target:  5'- aAGGUcgauuACGCGgCGGCCGCGAaCGCGGUg -3'
miRNA:   3'- -UCCA-----UGCGCgGCUGGCGCUaGCGCCA- -5'
27608 3' -60.5 NC_005882.1 + 32053 0.66 0.374004
Target:  5'- aAGGaUGCcgGCGCCGACacaaCGAUCGCGc- -3'
miRNA:   3'- -UCC-AUG--CGCGGCUGgc--GCUAGCGCca -5'
27608 3' -60.5 NC_005882.1 + 4904 0.66 0.365409
Target:  5'- gAGGU-CGUGuuCCGuGCCGCGG-CGCGGc -3'
miRNA:   3'- -UCCAuGCGC--GGC-UGGCGCUaGCGCCa -5'
27608 3' -60.5 NC_005882.1 + 26943 0.66 0.348631
Target:  5'- uGGGgcggGCGCgGCCGgcaaguucgcgGCCGUGAUCGgGcGUg -3'
miRNA:   3'- -UCCa---UGCG-CGGC-----------UGGCGCUAGCgC-CA- -5'
27608 3' -60.5 NC_005882.1 + 12614 0.66 0.332411
Target:  5'- cGGUGCGCuuGCCGGCgaCGCGAaggUCGCc-- -3'
miRNA:   3'- uCCAUGCG--CGGCUG--GCGCU---AGCGcca -5'
27608 3' -60.5 NC_005882.1 + 21736 0.67 0.316752
Target:  5'- aAGGUccgcGCGCGCCGucGCCaguuCGA-CGCGGa -3'
miRNA:   3'- -UCCA----UGCGCGGC--UGGc---GCUaGCGCCa -5'
27608 3' -60.5 NC_005882.1 + 27594 0.67 0.316752
Target:  5'- cGGcaugGCGaCGCaGGCCGCGGcCGCGGc -3'
miRNA:   3'- uCCa---UGC-GCGgCUGGCGCUaGCGCCa -5'
27608 3' -60.5 NC_005882.1 + 18245 0.67 0.309133
Target:  5'- ---cGCGCaagGCCGGCCGCGGUgGCaGGc -3'
miRNA:   3'- uccaUGCG---CGGCUGGCGCUAgCG-CCa -5'
27608 3' -60.5 NC_005882.1 + 16009 0.67 0.294317
Target:  5'- cGGGUGCguGCGCCG-CCGC-AagGCGGc -3'
miRNA:   3'- -UCCAUG--CGCGGCuGGCGcUagCGCCa -5'
27608 3' -60.5 NC_005882.1 + 13915 0.68 0.27109
Target:  5'- cGGUACgggcagcguaucgaGCGCCGcuucGCCGCGAUCaaGGc -3'
miRNA:   3'- uCCAUG--------------CGCGGC----UGGCGCUAGcgCCa -5'
27608 3' -60.5 NC_005882.1 + 27183 0.73 0.124577
Target:  5'- cGGGcGCGCGCugaugcucaaucCGAucgggauugccaucaCCGCGAUCGCGGUc -3'
miRNA:   3'- -UCCaUGCGCG------------GCU---------------GGCGCUAGCGCCA- -5'
27608 3' -60.5 NC_005882.1 + 3246 0.71 0.157632
Target:  5'- gAGGUACGgGCCGAuCUG-GAUCGuCGGc -3'
miRNA:   3'- -UCCAUGCgCGGCU-GGCgCUAGC-GCCa -5'
27608 3' -60.5 NC_005882.1 + 28261 0.7 0.195292
Target:  5'- aAGGUGC-CGCCGgcgGCCGCGcagGCGGUc -3'
miRNA:   3'- -UCCAUGcGCGGC---UGGCGCuagCGCCA- -5'
27608 3' -60.5 NC_005882.1 + 15959 0.69 0.239969
Target:  5'- cGGUAaggacucCGCGUCuACCGCGAgcugcgCGCGGa -3'
miRNA:   3'- uCCAU-------GCGCGGcUGGCGCUa-----GCGCCa -5'
27608 3' -60.5 NC_005882.1 + 32218 0.68 0.246828
Target:  5'- ---cGCGUGCUGACCGCcagcgaauGggCGCGGUg -3'
miRNA:   3'- uccaUGCGCGGCUGGCG--------CuaGCGCCA- -5'
27608 3' -60.5 NC_005882.1 + 12397 0.68 0.266357
Target:  5'- cGGcACGCgGCCGcuuuCCGCGAgaacCGCGGc -3'
miRNA:   3'- uCCaUGCG-CGGCu---GGCGCUa---GCGCCa -5'
27608 3' -60.5 NC_005882.1 + 16040 0.66 0.374004
Target:  5'- -cGUGCGCGUCcGCgCGCaGcUCGCGGUa -3'
miRNA:   3'- ucCAUGCGCGGcUG-GCG-CuAGCGCCA- -5'
27608 3' -60.5 NC_005882.1 + 15813 0.73 0.123208
Target:  5'- uGGaGCgGCGCCG-CCGCGAcUUGCGGUc -3'
miRNA:   3'- uCCaUG-CGCGGCuGGCGCU-AGCGCCA- -5'
27608 3' -60.5 NC_005882.1 + 25221 0.69 0.216929
Target:  5'- uGGUcCGUGCCGAUCGUGuucggcAUCGUGGc -3'
miRNA:   3'- uCCAuGCGCGGCUGGCGC------UAGCGCCa -5'
27608 3' -60.5 NC_005882.1 + 36563 0.68 0.246828
Target:  5'- cGGUcuGCGCGCUuucGCCGCGAUCuggguaGUGGUc -3'
miRNA:   3'- uCCA--UGCGCGGc--UGGCGCUAG------CGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.