miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27608 5' -53.7 NC_005882.1 + 27000 0.66 0.714066
Target:  5'- -uAUgGGAUUcGGGCG-CGGCGCGCu- -3'
miRNA:   3'- gcUAgCCUAA-CUCGUaGUCGCGCGcg -5'
27608 5' -53.7 NC_005882.1 + 25526 0.66 0.714066
Target:  5'- gCGcAUCGGAUgc-GCAaCGGCcCGCGCc -3'
miRNA:   3'- -GC-UAGCCUAacuCGUaGUCGcGCGCG- -5'
27608 5' -53.7 NC_005882.1 + 25339 0.66 0.699546
Target:  5'- aGAUCGGcgcgacgcuacucgGuAGCuUCGGCGCcGCGCu -3'
miRNA:   3'- gCUAGCCuaa-----------C-UCGuAGUCGCG-CGCG- -5'
27608 5' -53.7 NC_005882.1 + 14321 0.66 0.691677
Target:  5'- aCGA-CGGAUc--GCGUCGGC-CGCGUc -3'
miRNA:   3'- -GCUaGCCUAacuCGUAGUCGcGCGCG- -5'
27608 5' -53.7 NC_005882.1 + 6481 0.66 0.678119
Target:  5'- aCGAaCGcAUUGuGGCugucgcccaggCAGCGCGCGCg -3'
miRNA:   3'- -GCUaGCcUAAC-UCGua---------GUCGCGCGCG- -5'
27608 5' -53.7 NC_005882.1 + 31377 0.66 0.669042
Target:  5'- uGGUCGGcgUGAcGCGgcugcCGGCGCagccCGCg -3'
miRNA:   3'- gCUAGCCuaACU-CGUa----GUCGCGc---GCG- -5'
27608 5' -53.7 NC_005882.1 + 25277 0.67 0.657662
Target:  5'- uGAUCGcGAUUGccGGCGUC-GUGCuCGCc -3'
miRNA:   3'- gCUAGC-CUAAC--UCGUAGuCGCGcGCG- -5'
27608 5' -53.7 NC_005882.1 + 28028 0.67 0.657662
Target:  5'- gCGAUcCGGAagccGAGCuggcgaAGCuGCGCGCg -3'
miRNA:   3'- -GCUA-GCCUaa--CUCGuag---UCG-CGCGCG- -5'
27608 5' -53.7 NC_005882.1 + 30626 0.67 0.623415
Target:  5'- gGAUCGGGc--GGCGaUGGCGCuGCGCu -3'
miRNA:   3'- gCUAGCCUaacUCGUaGUCGCG-CGCG- -5'
27608 5' -53.7 NC_005882.1 + 3690 0.67 0.623415
Target:  5'- cCGGUCGGcgacgUGAucgacgcaagcgGCGUCGacGCGCuGCGCa -3'
miRNA:   3'- -GCUAGCCua---ACU------------CGUAGU--CGCG-CGCG- -5'
27608 5' -53.7 NC_005882.1 + 1764 0.67 0.623415
Target:  5'- gGAuUCGGcguAUUcAGCGUgGGCGCGCGg -3'
miRNA:   3'- gCU-AGCC---UAAcUCGUAgUCGCGCGCg -5'
27608 5' -53.7 NC_005882.1 + 23722 0.67 0.612001
Target:  5'- uGAaCGGGUUcGGGCGcaagcugaUCGGCgacgGCGCGCu -3'
miRNA:   3'- gCUaGCCUAA-CUCGU--------AGUCG----CGCGCG- -5'
27608 5' -53.7 NC_005882.1 + 4103 0.67 0.610861
Target:  5'- uGAUCGGA-UGAcucucgcGCAUCAcGCGgucuucgagguCGCGCa -3'
miRNA:   3'- gCUAGCCUaACU-------CGUAGU-CGC-----------GCGCG- -5'
27608 5' -53.7 NC_005882.1 + 31280 0.67 0.600607
Target:  5'- ---cCGGAUacAGCGUCuugccAGUGCGCGCc -3'
miRNA:   3'- gcuaGCCUAacUCGUAG-----UCGCGCGCG- -5'
27608 5' -53.7 NC_005882.1 + 21497 0.68 0.566635
Target:  5'- aCGAugUCGGuAUUGAucGuCGUCGGCGCcgguGCGCc -3'
miRNA:   3'- -GCU--AGCC-UAACU--C-GUAGUCGCG----CGCG- -5'
27608 5' -53.7 NC_005882.1 + 6049 0.68 0.555413
Target:  5'- uGGUCGGGaUGGacgccauacauGCGU-AGCGCGCGUu -3'
miRNA:   3'- gCUAGCCUaACU-----------CGUAgUCGCGCGCG- -5'
27608 5' -53.7 NC_005882.1 + 3860 0.68 0.555413
Target:  5'- ----aGGugcUUGAGCGUCgcgaucggcAGCGCGUGCg -3'
miRNA:   3'- gcuagCCu--AACUCGUAG---------UCGCGCGCG- -5'
27608 5' -53.7 NC_005882.1 + 12170 0.68 0.554295
Target:  5'- aCGGUCGaGGgcaugaaUUGAGaCAUCc-CGCGCGCa -3'
miRNA:   3'- -GCUAGC-CU-------AACUC-GUAGucGCGCGCG- -5'
27608 5' -53.7 NC_005882.1 + 26706 0.68 0.544258
Target:  5'- aGGUCcg--UGAGCGacggCAGCaGCGCGCg -3'
miRNA:   3'- gCUAGccuaACUCGUa---GUCG-CGCGCG- -5'
27608 5' -53.7 NC_005882.1 + 29210 0.69 0.511264
Target:  5'- cCGAUCuuc---AGCGUCAGCGCGuCGCc -3'
miRNA:   3'- -GCUAGccuaacUCGUAGUCGCGC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.