Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27609 | 5' | -56.1 | NC_005882.1 | + | 25077 | 0.65 | 0.558491 |
|
Target: 5'- cGAugGCCuUGAUCgCCgccgcgaugagguaGGAGCCGGCcACg -3' miRNA: 3'- aCU--UGGcACUAG-GG--------------UCUCGGCCGaUG- -5' |
|||||||
| 27609 | 5' | -56.1 | NC_005882.1 | + | 19400 | 0.66 | 0.51129 |
|
Target: 5'- cUGAucaGCCGUG-UCCCGGccgaauugcgucagcAGCCauucgcgcaGGCUGCg -3' miRNA: 3'- -ACU---UGGCACuAGGGUC---------------UCGG---------CCGAUG- -5' |
|||||||
| 27609 | 5' | -56.1 | NC_005882.1 | + | 26675 | 0.67 | 0.485669 |
|
Target: 5'- -cAACCGUGAUCCCGaGGuCCGcaauCUGCg -3' miRNA: 3'- acUUGGCACUAGGGUcUC-GGCc---GAUG- -5' |
|||||||
| 27609 | 5' | -56.1 | NC_005882.1 | + | 25044 | 0.67 | 0.475174 |
|
Target: 5'- cGGcCCG-GcgCCC-GAGCCGGCcGCa -3' miRNA: 3'- aCUuGGCaCuaGGGuCUCGGCCGaUG- -5' |
|||||||
| 27609 | 5' | -56.1 | NC_005882.1 | + | 12292 | 0.72 | 0.251034 |
|
Target: 5'- cGGccGCCGUGAugcgcUCCCAGAgguGCCGGUcgUACc -3' miRNA: 3'- aCU--UGGCACU-----AGGGUCU---CGGCCG--AUG- -5' |
|||||||
| 27609 | 5' | -56.1 | NC_005882.1 | + | 27738 | 1.09 | 0.000472 |
|
Target: 5'- gUGAACCGUGAUCCCAGAGCCGGCUACc -3' miRNA: 3'- -ACUUGGCACUAGGGUCUCGGCCGAUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home