miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2761 3' -48.7 NC_001491.2 + 122308 0.66 0.99855
Target:  5'- uUGGAAAGCGuGCaugcGUACACCuaucgACUcACCGg -3'
miRNA:   3'- -AUCUUUCGU-CGa---UAUGUGG-----UGA-UGGC- -5'
2761 3' -48.7 NC_001491.2 + 70309 0.66 0.998244
Target:  5'- gUGGuAAAGCGGCUcugguaGUGCGCCGUUAUUGa -3'
miRNA:   3'- -AUC-UUUCGUCGA------UAUGUGGUGAUGGC- -5'
2761 3' -48.7 NC_001491.2 + 117434 0.66 0.998244
Target:  5'- -cGgcGGCGGCUucGUGCGCCccgggcguCUACCa -3'
miRNA:   3'- auCuuUCGUCGA--UAUGUGGu-------GAUGGc -5'
2761 3' -48.7 NC_001491.2 + 34189 0.66 0.997465
Target:  5'- -cGGAAGUAuGCUGUcaACGCCuucauGCUACCu -3'
miRNA:   3'- auCUUUCGU-CGAUA--UGUGG-----UGAUGGc -5'
2761 3' -48.7 NC_001491.2 + 4929 0.66 0.997419
Target:  5'- cGGGAAGCccuacccucgcagAGCUGUGCgACCACcagcgGCUGu -3'
miRNA:   3'- aUCUUUCG-------------UCGAUAUG-UGGUGa----UGGC- -5'
2761 3' -48.7 NC_001491.2 + 19632 0.66 0.996979
Target:  5'- aGGuuGGUAGCUGccuggagcUGCGCaaGCUGCCGg -3'
miRNA:   3'- aUCuuUCGUCGAU--------AUGUGg-UGAUGGC- -5'
2761 3' -48.7 NC_001491.2 + 115979 0.67 0.996418
Target:  5'- -cGggGGCAGCa--GCACCA--GCCGc -3'
miRNA:   3'- auCuuUCGUCGauaUGUGGUgaUGGC- -5'
2761 3' -48.7 NC_001491.2 + 13461 0.67 0.995774
Target:  5'- gUAGAguucgccaccucGAGCAGCUGaGCGCCcucGCaUACCa -3'
miRNA:   3'- -AUCU------------UUCGUCGAUaUGUGG---UG-AUGGc -5'
2761 3' -48.7 NC_001491.2 + 123042 0.67 0.995038
Target:  5'- cGGAGcgcGGCAGCgagaccgcGUGCGCCGCgguguCCGu -3'
miRNA:   3'- aUCUU---UCGUCGa-------UAUGUGGUGau---GGC- -5'
2761 3' -48.7 NC_001491.2 + 138338 0.67 0.994202
Target:  5'- aGGGcgGAGUAGCUGaGCACCuCU-CCGg -3'
miRNA:   3'- aUCU--UUCGUCGAUaUGUGGuGAuGGC- -5'
2761 3' -48.7 NC_001491.2 + 135487 0.67 0.993256
Target:  5'- -uGAcAGCAGCgUAUACGuCCACgccuCCGg -3'
miRNA:   3'- auCUuUCGUCG-AUAUGU-GGUGau--GGC- -5'
2761 3' -48.7 NC_001491.2 + 123122 0.67 0.993256
Target:  5'- -cGcgGGCGGCccgGCGCCGCU-CCGg -3'
miRNA:   3'- auCuuUCGUCGauaUGUGGUGAuGGC- -5'
2761 3' -48.7 NC_001491.2 + 31963 0.68 0.989659
Target:  5'- gAGGGAGCGGac--GCGCCAgaGCCGc -3'
miRNA:   3'- aUCUUUCGUCgauaUGUGGUgaUGGC- -5'
2761 3' -48.7 NC_001491.2 + 61486 0.68 0.988173
Target:  5'- ----cAGC-GCUGUGCGCCGCUGgaguCCGg -3'
miRNA:   3'- aucuuUCGuCGAUAUGUGGUGAU----GGC- -5'
2761 3' -48.7 NC_001491.2 + 17319 0.69 0.984133
Target:  5'- ---uGAGCAGCUGUGCGcaagccacgugaacCCACUGCa- -3'
miRNA:   3'- aucuUUCGUCGAUAUGU--------------GGUGAUGgc -5'
2761 3' -48.7 NC_001491.2 + 124884 0.7 0.969692
Target:  5'- cGGAGAGguGCUcaGCuacuccgcccuGCCGCUGCCc -3'
miRNA:   3'- aUCUUUCguCGAuaUG-----------UGGUGAUGGc -5'
2761 3' -48.7 NC_001491.2 + 144876 0.7 0.969375
Target:  5'- cUGGgcGGCAGCcgccgggGUAggaggacCGCCGCUGCCGg -3'
miRNA:   3'- -AUCuuUCGUCGa------UAU-------GUGGUGAUGGC- -5'
2761 3' -48.7 NC_001491.2 + 34436 0.71 0.959131
Target:  5'- -cGAGAGUAGCUua--GCCACgGCCGu -3'
miRNA:   3'- auCUUUCGUCGAuaugUGGUGaUGGC- -5'
2761 3' -48.7 NC_001491.2 + 94518 0.72 0.925391
Target:  5'- cGGGGAGCAGCUGUcGCAgaagagccuCUGCUACCc -3'
miRNA:   3'- aUCUUUCGUCGAUA-UGU---------GGUGAUGGc -5'
2761 3' -48.7 NC_001491.2 + 112851 0.73 0.906853
Target:  5'- gUGGGAAGUGGCUcaACACCGugGCCGg -3'
miRNA:   3'- -AUCUUUCGUCGAuaUGUGGUgaUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.