Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27612 | 5' | -56.7 | NC_005882.1 | + | 4524 | 0.66 | 0.495478 |
|
Target: 5'- -cAGGUCgAGgucguCGAGgCUGcgCGGCCAu -3' miRNA: 3'- caUCCAGgUC-----GUUCgGACuaGCCGGU- -5' |
|||||||
| 27612 | 5' | -56.7 | NC_005882.1 | + | 3853 | 0.67 | 0.443429 |
|
Target: 5'- ---uGUCCAuCAu-CCUGAUCGGCCAg -3' miRNA: 3'- caucCAGGUcGUucGGACUAGCCGGU- -5' |
|||||||
| 27612 | 5' | -56.7 | NC_005882.1 | + | 8251 | 0.67 | 0.423484 |
|
Target: 5'- cUGGGUggCGGCAAGCgCcGGUCGGCUg -3' miRNA: 3'- cAUCCAg-GUCGUUCG-GaCUAGCCGGu -5' |
|||||||
| 27612 | 5' | -56.7 | NC_005882.1 | + | 32152 | 0.67 | 0.404086 |
|
Target: 5'- --cGGUUCGGUAGGCUUcugCGGCCGu -3' miRNA: 3'- cauCCAGGUCGUUCGGAcuaGCCGGU- -5' |
|||||||
| 27612 | 5' | -56.7 | NC_005882.1 | + | 9670 | 0.67 | 0.3946 |
|
Target: 5'- --cGGUCgGGCAAGCCauacaGGCCGg -3' miRNA: 3'- cauCCAGgUCGUUCGGacuagCCGGU- -5' |
|||||||
| 27612 | 5' | -56.7 | NC_005882.1 | + | 11079 | 0.67 | 0.393659 |
|
Target: 5'- uGUAGGaCCGGCGguuccucGGCCUcGAUCGucaGCCGu -3' miRNA: 3'- -CAUCCaGGUCGU-------UCGGA-CUAGC---CGGU- -5' |
|||||||
| 27612 | 5' | -56.7 | NC_005882.1 | + | 23726 | 0.68 | 0.38526 |
|
Target: 5'- -cGGGUUCGggcGCAAG-CUGAUCGGCg- -3' miRNA: 3'- caUCCAGGU---CGUUCgGACUAGCCGgu -5' |
|||||||
| 27612 | 5' | -56.7 | NC_005882.1 | + | 6985 | 0.68 | 0.375155 |
|
Target: 5'- -cGGGaCCAGCAuuucaaaaagcuuGGUCUGAUuucCGGCCGc -3' miRNA: 3'- caUCCaGGUCGU-------------UCGGACUA---GCCGGU- -5' |
|||||||
| 27612 | 5' | -56.7 | NC_005882.1 | + | 27127 | 0.69 | 0.307988 |
|
Target: 5'- cUGGGcggCCAGCucgugaacGGCCUGAUgcUGGCCGg -3' miRNA: 3'- cAUCCa--GGUCGu-------UCGGACUA--GCCGGU- -5' |
|||||||
| 27612 | 5' | -56.7 | NC_005882.1 | + | 30341 | 1.09 | 0.000356 |
|
Target: 5'- cGUAGGUCCAGCAAGCCUGAUCGGCCAg -3' miRNA: 3'- -CAUCCAGGUCGUUCGGACUAGCCGGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home