miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27613 3' -57.3 NC_005882.1 + 7617 0.66 0.491078
Target:  5'- -cCGGcCUGgaGUGCgCCGAGCACGa-- -3'
miRNA:   3'- guGCCaGACg-UACG-GGCUCGUGCagu -5'
27613 3' -57.3 NC_005882.1 + 33064 0.66 0.480631
Target:  5'- -cCGGUCUGCGacUGCUCGAccuGCGCcuUCAg -3'
miRNA:   3'- guGCCAGACGU--ACGGGCU---CGUGc-AGU- -5'
27613 3' -57.3 NC_005882.1 + 3455 0.66 0.470293
Target:  5'- cCGCGaaGUCUGC-UGCCUGAcgGCACG-CGg -3'
miRNA:   3'- -GUGC--CAGACGuACGGGCU--CGUGCaGU- -5'
27613 3' -57.3 NC_005882.1 + 22105 0.66 0.460069
Target:  5'- gGCGGUgCgaaCGUGaUCGAGCACGUCGa -3'
miRNA:   3'- gUGCCA-Gac-GUACgGGCUCGUGCAGU- -5'
27613 3' -57.3 NC_005882.1 + 18925 0.66 0.446957
Target:  5'- -uCGGUCUGCGUGCCUgcccggaaaaugugGAGUgguuucGCGUUc -3'
miRNA:   3'- guGCCAGACGUACGGG--------------CUCG------UGCAGu -5'
27613 3' -57.3 NC_005882.1 + 21806 0.67 0.401366
Target:  5'- aAUGGUCgaUGCcaucgucGCCCGGcuGCGCGUCAa -3'
miRNA:   3'- gUGCCAG--ACGua-----CGGGCU--CGUGCAGU- -5'
27613 3' -57.3 NC_005882.1 + 25689 0.67 0.392053
Target:  5'- cCGCcGUCgcGUAUGUgCCGAGCAUGUCGg -3'
miRNA:   3'- -GUGcCAGa-CGUACG-GGCUCGUGCAGU- -5'
27613 3' -57.3 NC_005882.1 + 3377 0.68 0.373856
Target:  5'- gCGCGGgcgCUGCGcgGCCUGGGCuaccGCGUg- -3'
miRNA:   3'- -GUGCCa--GACGUa-CGGGCUCG----UGCAgu -5'
27613 3' -57.3 NC_005882.1 + 23565 0.68 0.364974
Target:  5'- aCACGGUCgUG-AUGCCCuguucguuGAGCAUGUUc -3'
miRNA:   3'- -GUGCCAG-ACgUACGGG--------CUCGUGCAGu -5'
27613 3' -57.3 NC_005882.1 + 30180 0.68 0.364974
Target:  5'- gCACGGUCagUGCGUcgaaGCCCGGcuucgcGCGCGUa- -3'
miRNA:   3'- -GUGCCAG--ACGUA----CGGGCU------CGUGCAgu -5'
27613 3' -57.3 NC_005882.1 + 598 0.75 0.13259
Target:  5'- uGCGGUCgGCAaucucgcGCCCGAGCugGUUc -3'
miRNA:   3'- gUGCCAGaCGUa------CGGGCUCGugCAGu -5'
27613 3' -57.3 NC_005882.1 + 30536 1.08 0.000416
Target:  5'- uCACGGUCUGCAUGCCCGAGCACGUCAg -3'
miRNA:   3'- -GUGCCAGACGUACGGGCUCGUGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.