miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27613 5' -55.6 NC_005882.1 + 23181 0.66 0.628377
Target:  5'- --gGgGCGAUCGcgUACaUCGAuGCGCCGa -3'
miRNA:   3'- cagCgCGCUAGC--AUG-AGCU-CGUGGCg -5'
27613 5' -55.6 NC_005882.1 + 10789 0.66 0.625014
Target:  5'- gGUCGacgGCGGUCuacgggGUGCUUGAGCAgcaauacaaggcggUCGCg -3'
miRNA:   3'- -CAGCg--CGCUAG------CAUGAGCUCGU--------------GGCG- -5'
27613 5' -55.6 NC_005882.1 + 13617 0.66 0.617168
Target:  5'- cUCGC-CGAUCGcgUGCUgGugaAGCugCGCa -3'
miRNA:   3'- cAGCGcGCUAGC--AUGAgC---UCGugGCG- -5'
27613 5' -55.6 NC_005882.1 + 20708 0.66 0.610448
Target:  5'- --gGCGCcaacAUCGUGCUCGccuacguuccgcugcAGCGCgGCg -3'
miRNA:   3'- cagCGCGc---UAGCAUGAGC---------------UCGUGgCG- -5'
27613 5' -55.6 NC_005882.1 + 3581 0.66 0.610448
Target:  5'- cGUCGCGUGcuggucAUCGUGagcCGAGUgcgcagcgcgucgacGCCGCu -3'
miRNA:   3'- -CAGCGCGC------UAGCAUga-GCUCG---------------UGGCG- -5'
27613 5' -55.6 NC_005882.1 + 3622 0.66 0.594799
Target:  5'- -gCGaCGCGAUCGUGC-CGAaacgguGuCGCUGCu -3'
miRNA:   3'- caGC-GCGCUAGCAUGaGCU------C-GUGGCG- -5'
27613 5' -55.6 NC_005882.1 + 11840 0.66 0.588111
Target:  5'- -cCGCGCGGugaucguccucggcgUCGUAgUCG-GCGUCGCg -3'
miRNA:   3'- caGCGCGCU---------------AGCAUgAGCuCGUGGCG- -5'
27613 5' -55.6 NC_005882.1 + 23264 0.66 0.583659
Target:  5'- -cUGCGCGAgcgUCGUGCcgaUCGGcGCAUCGa -3'
miRNA:   3'- caGCGCGCU---AGCAUG---AGCU-CGUGGCg -5'
27613 5' -55.6 NC_005882.1 + 19803 0.66 0.583659
Target:  5'- -aCGCGCGAgcgcgccggCGUgACgacgaCGGGCGCCGa -3'
miRNA:   3'- caGCGCGCUa--------GCA-UGa----GCUCGUGGCg -5'
27613 5' -55.6 NC_005882.1 + 12203 0.66 0.583659
Target:  5'- uUCGUGCGcUCGUGCgguaCGAccgGCACCu- -3'
miRNA:   3'- cAGCGCGCuAGCAUGa---GCU---CGUGGcg -5'
27613 5' -55.6 NC_005882.1 + 25433 0.66 0.572562
Target:  5'- cGUCGUGCG--CGUGC-CGgaaAGCGCgGCg -3'
miRNA:   3'- -CAGCGCGCuaGCAUGaGC---UCGUGgCG- -5'
27613 5' -55.6 NC_005882.1 + 15314 0.66 0.572562
Target:  5'- uUCGcCGCGugcCGUucauCgUCGAGCugCGCa -3'
miRNA:   3'- cAGC-GCGCua-GCAu---G-AGCUCGugGCG- -5'
27613 5' -55.6 NC_005882.1 + 20320 0.66 0.572562
Target:  5'- uUCGCGguaguCGAUCGgaUACUCGAG-AUCGUg -3'
miRNA:   3'- cAGCGC-----GCUAGC--AUGAGCUCgUGGCG- -5'
27613 5' -55.6 NC_005882.1 + 9565 0.67 0.561514
Target:  5'- --gGCGCG-UCGUGCUUGcGGcCGCCaGCg -3'
miRNA:   3'- cagCGCGCuAGCAUGAGC-UC-GUGG-CG- -5'
27613 5' -55.6 NC_005882.1 + 22029 0.67 0.561514
Target:  5'- -nCG-GCGGUgccaucgaCGUGCUCGAucacguucGCACCGCc -3'
miRNA:   3'- caGCgCGCUA--------GCAUGAGCU--------CGUGGCG- -5'
27613 5' -55.6 NC_005882.1 + 22102 0.67 0.558211
Target:  5'- --gGUGCGAaCGUGaUCGAGCacgucgauggcaccGCCGCg -3'
miRNA:   3'- cagCGCGCUaGCAUgAGCUCG--------------UGGCG- -5'
27613 5' -55.6 NC_005882.1 + 27979 0.67 0.550526
Target:  5'- -gCGCGUGuucggCGUAgUCG-GCACCGa -3'
miRNA:   3'- caGCGCGCua---GCAUgAGCuCGUGGCg -5'
27613 5' -55.6 NC_005882.1 + 21176 0.67 0.550526
Target:  5'- aUCG-GCGGUCGUuucggcaacGC-CGAGCGCCuucGCg -3'
miRNA:   3'- cAGCgCGCUAGCA---------UGaGCUCGUGG---CG- -5'
27613 5' -55.6 NC_005882.1 + 15696 0.67 0.539605
Target:  5'- gGUCGCGCGGaCGUcCggGAuGCGCgGCa -3'
miRNA:   3'- -CAGCGCGCUaGCAuGagCU-CGUGgCG- -5'
27613 5' -55.6 NC_005882.1 + 22467 0.67 0.539605
Target:  5'- -gCGCGCGggCuUGgUCGAcgGCGCUGCg -3'
miRNA:   3'- caGCGCGCuaGcAUgAGCU--CGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.